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    • Diversity and Selection of Surface Marine Microbiomes in the Atlantic-Influenced Arctic 

      Aalto, Nerea Johanna; Schweitzer, Hannah D.; Krsmanovic, Stina; Campbell, Karley; Bernstein, Hans Christopher (Journal article; Tidsskriftartikkel; Peer reviewed, 2022-07-14)
      Serglycin is a proteoglycan highly expressed by immune cells, in which its functions are linked to storage, secretion, transport, and protection of chemokines, proteases, histamine, growth factors, and other bioactive molecules. In recent years, it has been demonstrated that serglycin is also expressed by several other cell types, such as endothelial cells, muscle cells, and multiple types of ...
    • DNA Metabarcoding of Deep-Sea Sediment Communities Using COI: Community Assessment, Spatio-Temporal Patterns and Comparison with 18S rDNA 

      Atienza, Sara; Guardiola, Magdalena; Præbel, Kim; Antich, Adrià; Turon, Xavier; Wangensteen Fuentes, Owen Simon (Journal article; Tidsskriftartikkel; Peer reviewed, 2020-03-26)
      Among the complex ecosystems and habitats that form the deep sea, submarine canyons and open slope systems are regarded as potential hotspots of biodiversity. We assessed the spatial and temporal patterns of biodiversity in sediment communities of a NW Mediterranean Canyon and its adjacent open slope (Blanes Canyon) with DNA metabarcoding. We sampled three layers of sediment and four different depths ...
    • DNA metabarcoding of littoral hardbottom communities: high diversity and database gaps revealed by two molecular markers 

      Wangensteen Fuentes, Owen Simon; Palacín, Creu; Guardiola, Magdalena; Turon, Xavier (Journal article; Tidsskriftartikkel; Peer reviewed, 2018-05-04)
      Biodiversity assessment of marine hard-bottom communities is hindered by the high diversity and size-ranges of the organisms present. We developed a DNA metabarcoding protocol for biodiversity characterization of structurally complex natural marine hard-bottom communities. We used two molecular markers: the “Leray fragment” of mitochondrial <i>cytochrome c oxidase</i> (COI), for which a novel primer ...
    • DNA metabarcoding reveals modern and past eukaryotic communities in a high-mountain peat bog system 

      Garcés-Pastor, Sandra; Wangensteen Fuentes, Owen Simon; Pérez-Haase, Aaron; Pèlachs, Albert; Pérez-Obiol, Ramon; Cañellas-Boltà, Nuria; Mariani, Stefano; Vegas-Villarubia, Teresa (Journal article; Tidsskriftartikkel; Peer reviewed, 2019-09-30)
      Peat bogs located in high mountains are suitable places to study local environmental responses to climate variability. These ecosystems host a large number of eukaryotes with diverse taxonomic and functional diversity. We carried out a metabarcoding study using universal 18S and COI markers to explore the composition of past and present eukaryotic communities of a Pyrenean peat bog ecosystem. We ...
    • DNA metabarcoding reveals the importance of gelatinous zooplankton in the diet of Pandalus borealis, a keystone species in the Arctic 

      Urban, Paulina; Præbel, Kim; Bhat, Shripathi; Dierking, Jan; Wangensteen, Owen S. (Journal article; Tidsskriftartikkel; Peer reviewed, 2021-12-22)
      Information about the dietary composition of a species is crucial to understanding their position and role in the food web. Increasingly, molecular approaches such as DNA metabarcoding are used in studying trophic relationships, not least because they may alleviate problems such as low taxonomic resolution or underestimation of digestible taxa in the diet. Here, we used DNA metabarcoding with universal ...
    • DNA metabarcoding reveals the importance of gelatinous zooplankton in the diet of Pandalus borealis, a keystone species in the Arctic 

      Urban, Paulina; Præbel, Kim; Bhat, Shripathi; Dierking, Jan; Wangensteen Fuentes, Owen Simon (Journal article; Tidsskriftartikkel; Peer reviewed, 2021-12-22)
      Information about the dietary composition of a species is crucial to understanding their position and role in the food web. Increasingly, molecular approaches such as DNA metabarcoding are used in studying trophic relationships, not least because they may alleviate problems such as low taxonomic resolution or underestimation of digestible taxa in the diet. Here, we used DNA metabarcoding with ...
    • DNA metabarcoding unveils niche overlapping and competition among Caribbean sea urchins 

      Rodríguez-Barreras, Ruber; Godoy-Vitorino, Filipa; Præbel, Kim; Wangensteen, Owen S. (Journal article; Tidsskriftartikkel; Peer reviewed, 2020-11-10)
      Detailed information of trophic interactions among consumer–resources in food webs is usually limited due to the lack of accurate identification of eaten food resources. The use of DNA-metabarcoding has been proven useful for molecular identification of the numerous taxa present in stomach contents. Here, we characterize the diet and trophic behavior of four sea urchin species inhabiting shallow ...
    • DNA vaccines for fish: Review and perspectives on correlates of protection 

      Dalmo, Roy Ambli (Journal article; Tidsskriftartikkel; Peer reviewed, 2017-10-24)
      Recently in 2016, the European Medicines Agency (EMA) recommended granting a marketing authorization in the EU for “Clynav,” a DNA vaccine against salmon pancreas disease (salmonid alphavirus‐3). Generally, DNA vaccines induce both early and late immune responses in fish that may be protective against disease. Several transcriptomic approaches have been performed to map immunome profiles following ...
    • DnoisE: distance denoising by entropy. An open-source parallelizable alternative for denoising sequence datasets 

      Antich, Adrià; Palacín, Creu; Turon, Xavier (Journal article; Tidsskriftartikkel; Peer reviewed, 2022-01-19)
      DNA metabarcoding is broadly used in biodiversity studies encompassing a wide range of organisms. Erroneous amplicons, generated during amplification and sequencing procedures, constitute one of the major sources of concern for the interpretation of metabarcoding results. Several denoising programs have been implemented to detect and eliminate these errors. However, almost all denoising software ...
    • Do national resources have to be centrally managed? Vested interests and institutional reform in Norwegian fisheries governance 

      Jentoft, Svein; Mikalsen, Knut h (Journal article; Tidsskriftartikkel; Peer reviewed, 2014)
      Corporatism -with its privileged access, restricted participation and centralized structures - has a long history in Norwegian fisheries governance. Co-management – understood as a decentralized, bottom-up and more inclusive form of fisheries governance - has not been considered a relevant alternative.. Why does corporatism still prevail in a context where stakeholder status in fisheries governance ...
    • Do stocking densities affect the gut microbiota of gibel carp (Carassius auratus gibelio) cultured in ponds? 

      Ringø, Einar (Journal article; Tidsskriftartikkel; Peer reviewed, 2011)
      The aim of the present study was to evaluate the intestinal microbial communities of gibel carp (Carassius auratus gibelio) cultivated in two beach ponds at different stocking densities. The two ponds were both ~3.33 hm2 in acreage and ~1.5 m in depth. The stocking densities included one intensive with 2 fish m–3 while the other treated as semi-intensive with 1 fish m–3. The gut microbiota (both ...
    • Do we choose differently after a discussion? Results from a deliberative valuation study in Ireland 

      Aanesen, Margrethe; Armstrong, Claire W.; Van Rensburg, Tom M. (Journal article; Tidsskriftartikkel; Peer reviewed, 2021)
      A criticism against individual-based stated preference surveys is that people seldom make choices in social isolation. An approach used in response to this is deliberative valuation. We conduct a series of valuation workshops including a choice experiment. This involves providing respondents with information and opportunity to discuss. They made their choices individually both before and after the ...
    • Does soak time influence the effect of artificial light on catch efficiency in snow crab (Chionoecetes opilio) pot fishery? 

      Cerbule, Kristine; Herrmann, Bent; Grimaldo, Eduardo; Grimsmo, Leif; Karlsen, Junita D. (Journal article; Tidsskriftartikkel; Peer reviewed, 2023-12-09)
      In the Barents Sea commercial snow crab (Chionoecetes opilio) fishery, an increase in catch efficiency of the conical pots is important for the profitability of the industry. Light emitting diodes (LEDs) have previously been tested for increasing catch efficiency of the snow crab pots. These earlier experiments have shown varying results ranging from large increase in snow crab catches to no ...
    • Does the efficiency of a counter-herding device depend on seabed contact? 

      Melli, Valentina; Krag, Ludvig Ahm; Herrmann, Bent; Karlsen, Junita Diana; Feekings, Jordan (Journal article; Tidsskriftartikkel; Peer reviewed, 2020-07-06)
      To prevent unwanted fish bycatch from entering the trawl, we modified a counter-herding device, FLEXSELECT, developed for a Northeast Atlantic <i>Nephrops</i> (<i>Nephrops norvegicus</i>) trawl fishery. FLEXSELECT, which was designed to direct fish away from the trawl by means of sweeping ropes in the herding area, has been shown to be highly effective on both roundfish and flatfish species. However, ...
    • Domestic cats (Felis catus) in Denmark have increased significantly in size since the Viking Age 

      Bitz-Thorsen, Julie; Gotfredsen, Anne Birgitte (Journal article; Tidsskriftartikkel; Peer reviewed, 2018-12-03)
      The earliest finds of domestic cat in Denmark date back to the Roman Iron Age (c. 1–375 AD). Initially, cats occurred sparsely and only from the Viking Age (c. 850–1050 AD) did they become more frequent in numbers, though primarily in urban contexts and in connection with fur production. In medieval times, cats became beasts of pest control in rural settlements, manorial estates as well as in the ...
    • Dredge selectivity in a Mediterranean striped venus clam (Chamelea gallina) fishery 

      Petetta, Andrea; Herrmann, Bent; Virgili, Massimo; Bargione, Giada; Vasapollo, Claudio; Lucchetti, Alessandro (Journal article; Tidsskriftartikkel; Peer reviewed, 2021-02-15)
      The striped venus clam Chamelea gallina is the target of a large fleet of hydraulic dredgers, which represent an important fishing sector in terms of income and landings in the Mediterranean Sea. Although there is information on the catch rates, impact and discards related to this fishery, the size selection process carried out by the dredge during trawl under commercial conditions is practically ...
    • Drivers of Atmosphere-Ocean CO2 Flux in Northern Norwegian Fjords 

      Aalto, Nerea Johanna; Campbell, Karley; Eilertsen, Hans Christian; Bernstein, Hans Christopher (Journal article; Tidsskriftartikkel; Peer reviewed, 2021-07-07)
      High-latitude fjords and continental shelves are shown to be sinks for atmospheric CO2, yet large spatial-temporal variability and poor regional coverage of sea-air CO2 flux data, especially from fjord systems, makes it difficult to scale our knowledge on how they contribute to atmospheric carbon regulation. The magnitude and seasonal variability of atmosphere-sea CO2 flux was investigated in ...
    • Dynamics of bacterial community exposed to hydrocarbons and oleophilic fertilizer in high-Arctic intertidal beach 

      RØberg, stian; Østerhus, Jan ivar; Landfald, Bjarne (Journal article; Tidsskriftartikkel; Peer reviewed, 2011)
      Exposure of pristine microbial environments to hydrocarbon contamination stimulates growth of the initially small fraction of indigenous hydrocarbon-degrading bacteria. Custom-made oleophilic fertilizers have been demonstrated to promote oil bioremediation by boosting this proliferation. In the present study, the temporal dynamics of the bacterial community structure and the individual influences ...
    • East is East and West is West: Population genomics and hierarchical analyses reveal genetic structure and adaptation footprints in the keystone species Paracentrotus lividus (Echinoidea) 

      Carreras, Carlos; García-Cisneros, Alex; Wangensteen Fuentes, Owen Simon; Ordóñez, Victor; Palacín, Creu; Pascual, Marta; Turon, Xavier (Journal article; Tidsskriftartikkel; Peer reviewed, 2019-12-14)
      <i>Aim</i> - The Atlanto‐Mediterranean edible purple sea urchin, <i>Paracentrotus lividus</i>, is a commercially exploited keystone species in benthic communities. Its browsing activity can deeply modify the littoral landscape, and changes in its abundance are of major conservation concern. This species is facing nowadays contrasting anthropogenic pressures linked to predator release, exploitation ...
    • The ecological and economic value of cold-water coral ecosystems 

      Foley, Naomi; Armstrong, Claire W. (Journal article; Tidsskriftartikkel, 2010)
      Despite the growing scientific literature on cold-water corals (CWC) there appears to be no studies that address the economic values or economic management of the resource. This paper presents an overview of the goods and services of CWC and their associated biodiversity. Use and non-use values associated with CWC are presented, and the methods relevant for assessing their valuation are discussed. ...