• Chip Based Nanoscopy: Towards Integration and High-throughput Imaging 

      Ahluwalia, Balpreet Singh; Coucheron, David Andre; Helle, Øystein Ivar; Øie, Cristina Ionica; Dullo, Firehun Tsige (Journal article; Tidsskriftartikkel; Peer reviewed, 2017)
      Super-resolution optical microscopy, commonly referred to as optical nanoscopy, has enabled imaging of biological samples with a resolution that was only achievable previously using electron microscopy. Optical nanoscopy is a rapidly growing field, with several different techniques and implementations that overcome the diffraction limit of light. However, the common nanoscope continues to be a rather ...
    • Chip-based multimodal super-resolution microscopy for histological investigations of cryopreserved tissue sections 

      Villegas, Luis; Dubey, Vishesh Kumar; Nystad, Mona; Tinguely, Jean-Claude; Coucheron, David Andre; Dullo, Firehun Tsige; Priyadarshi, Anish; Acuna Maldonado, Sebastian Andres; Ahmad, Azeem; Mateos, Jose M.; Barmettler, Gery; Ziegler, Urs; Birgisdottir, Åsa Birna; Hovd, Aud-Malin Karlsson; Fenton, Kristin Andreassen; Acharya, Ganesh; Agarwal, Krishna; Ahluwalia, Balpreet Singh (Journal article; Tidsskriftartikkel; Peer reviewed, 2022-02-24)
      Histology involves the observation of structural features in tissues using a microscope. While diffraction-limited optical microscopes are commonly used in histological investigations, their resolving capabilities are insufficient to visualize details at subcellular level. Although a novel set of super-resolution optical microscopy techniques can fulfill the resolution demands in such cases, the ...
    • Chip-based optical microscopy for imaging membrane sieve plates of liver scavenger cells 

      Helle, Øystein Ivar; Øie, Cristina Ionica; McCourt, Peter Anthony; Ahluwalia, Balpreet Singh (Journal article; Tidsskriftartikkel; Peer reviewed, 2015-08-26)
      The evanescent field on top of optical waveguides is used to image membrane network and sieve-plates of liver endothelial cells. In waveguide excitation, the evanescent field is dominant only near the surface (~100-150 nm) providing a default optical sectioning by illuminating fluorophores in close proximity to the surface and thus benefiting higher signal-to-noise ratio. The sieve plates of liver ...
    • Chip-Based Resonance Raman Spectroscopy Using Tantalum Pentoxide Waveguides 

      Coucheron, David Andre; Wadduwage, Dushan Nawoda; Murugan, Ganapathy Senthil; So, Peter T. C.; Ahluwalia, Balpreet Singh (Journal article; Tidsskriftartikkel; Peer reviewed, 2019-05-08)
      Blood analysis is an important diagnostic tool, as it provides a wealth of information about the patient's health. Raman spectroscopy is a promising tool for blood analysis, but widespread clinical application is limited by its low signal strength, as well as complex and costly instrumentation. The growing field of waveguide-based Raman spectroscopy tries to solve these challenges by working toward ...
    • Chip-based wide field-of-view nanoscopy 

      Ahluwalia, Balpreet Singh; Helle, Øystein Ivar; Diekmann, Robin; Øie, Cristina Ionica; McCourt, Peter A. G.; Schuttpelz, Mark (Journal article; Tidsskriftartikkel; Peer reviewed, 2017-04-24)
      Present optical nanoscopy techniques use a complex microscope for imaging and a simple glass slide to hold the sample. Here, we demonstrate the inverse: the use of a complex, but mass-producible optical chip, which hosts the sample and provides a waveguide for the illumination source, and a standard low-cost microscope to acquire super-resolved images via two different approaches. Waveguides composed ...
    • Chirp coded ultrasonic pulses used for scanning acoustic microscopy 

      Habib, Anowarul; Melandsø, Frank (Journal article; Tidsskriftartikkel; Peer reviewed, 2017-11-02)
      In the present study, chirp coded pulses are investigated with respect to high frequency imaging. These pulses were used drive broadband polymer transducers assembled from an adhesive-free layer-be-layer deposition method. The image quality obtained from using a long chirp coded pulse was compared with images generated from shorter pulses. This includes the Ricker wavelet and the square pulse most ...
    • CIRFA Cruise 2022. Cruise report. 

      Dierking, Wolfgang Fritz Otto; Schneider, Andrea; Eltoft, Torbjørn; Gerland, Sebastian (Research report; Forskningsrapport, 2022)
      This report gives a complete record of all data sets that were collected during the CIRFA cruise 22 April - 9 May 2022, with RV Kronprins Haakon, to the western Fram Strait and the East Greenland Sea. IMR cruise ID 2022704. The CIRFA-cruise 2022 was funded by UiT the Arctic University of Norway, the European Space Agency (RFP Response No 3-17845), the Research Council of Norway (RCN project ...
    • Classification of low backscatter ocean regions using log-cumulants 

      Skrunes, Stine; Brekke, Camilla (Conference object; Konferansebidrag, 2015-01)
      In a synthetic aperture radar image, low backscatter regions of various origin can be observed in ocean areas. Operational oil spill detection services work to discriminate anthropogenic oil spills from natural phenomena such as seeps, low wind fields, thin ice and biogenic slicks. In this paper, we investigate the potential of using matrix log-cumulants for this purpose.
    • Classification of Micro-Damage in Piezoelectric Ceramics Using Machine Learning of Ultrasound Signals 

      Tripathi, Gaurav; Anowarul, Habib; Agarwal, Krishna; Prasad, Dilip K. (Journal article; Peer reviewed, 2019-09-28)
      Ultrasound based structural health monitoring of piezoelectric material is challenging if a damage changes at a microscale over time. Classifying geometrically similar damages with a difference in diameter as small as 100 m is difficult using conventional sensing and signal analysis approaches. Here, we use an unconventional ultrasound sensing approach that collects information of the entire ...
    • Climatic trends in E-region critical frequency and virtual height above Tromsø (70 degrees N, 10 degrees E) 

      Cannon, P. S.; Hall, Chris; Brekke, Asgeir (Journal article; Tidsskriftartikkel; Peer reviewed, 2007-11-29)
      We have examined the long time series of observations of E-region virtual height (1948–2006) and critical frequency (1935-2006) hitherto made by the Tromsø ionosonde at 70 degrees N, 19 degrees E. Combining a simplistic trend analysis with a rigorous treatment of errors we identify a negative trend in critical frequency. While a similar analysis of the virtual height h'E also suggests a negative ...
    • A clinically motivated self-supervised approach for content-based image retrieval of CT liver images 

      Wickstrøm, Kristoffer; Østmo, Eirik Agnalt; Radiya, Keyur; Mikalsen, Karl Øyvind; Kampffmeyer, Michael; Jenssen, Robert (Journal article; Tidsskriftartikkel; Peer reviewed, 2023-05-09)
      Deep learning-based approaches for content-based image retrieval (CBIR) of computed tomography (CT) liver images is an active field of research, but suffer from some critical limitations. First, they are heavily reliant on labeled data, which can be challenging and costly to acquire. Second, they lack transparency and explainability, which limits the trustworthiness of deep CBIR systems. We address ...
    • Clinically relevant features for predicting the severity of surgical site infections 

      Boubekki, Ahcene; Myhre, Jonas Nordhaug; Luppino, Luigi Tommaso; Mikalsen, Karl Øyvind; Revhaug, Arthur; Jenssen, Robert (Journal article; Tidsskriftartikkel, 2021)
      Surgical site infections are hospital-acquired infections resulting in severe risk for patients and significantly increased costs for healthcare providers. In this work, we show how to leverage irregularly sampled preoperative blood tests to predict, on the day of surgery, a future surgical site infection and its severity. Our dataset is extracted from the electronic health records of patients who ...
    • CMIP5 model selection for ISMIP6 ice sheet model forcing: Greenland and Antarctica 

      Barthel, Alice; Agosta, Cécile; Little, Christopher M.; Hattermann, Tore; Jourdain, Nicolas; Goelzer, Heiko; Nowicki, Sophie; Seroussi, Helene; Straneo, Fiammetta; Bracegirdle, Thomas J. (Journal article; Tidsskriftartikkel; Peer reviewed, 2020-03-06)
      The ice sheet model intercomparison project for CMIP6 (ISMIP6) effort brings together the ice sheet and climate modeling communities to gain understanding of the ice sheet contribution to sea level rise. ISMIP6 conducts stand-alone ice sheet experiments that use space- and time-varying forcing derived from atmosphere–ocean coupled global climate models (AOGCMs) to reflect plausible trajectories for ...
    • CO2 Increase Experiments Using the CESM: Relationship to Climate Sensitivity and Comparison of CESM1 to CESM2 

      Bacmeister, Julio T.; Hannay, Cecile; Medeiros, Brian; Gettelmann, Andrew; Neale, Richard; Fredriksen, Hege-Beate; Lipscomb, William H.; Simpson, Isla; Bailey, David Anthony; Holland, Marika M.; Lindsay, Keith; Otto-Bliesner, Bette L. (Journal article; Tidsskriftartikkel; Peer reviewed, 2020-10-14)
      We examine the response of the Community Earth System Model Versions 1 and 2 (CESM1 and CESM2) to abrupt quadrupling of atmospheric CO2 concentrations (4xCO2) and to 1% annually increasing CO2 concentrations (1%CO2). Different estimates of equilibrium climate sensitivity (ECS) for CESM1 and CESM2 are presented. All estimates show that the sensitivity of CESM2 has increased by 1.5 K or more over that ...
    • Combination of large and small basis sets in electronic structure calculations on large systems 

      Røeggen, Inge Arvid; Gao, Bin (Journal article; Tidsskriftartikkel; Peer reviewed, 2018-04)
      Two basis sets-a large and a small one-are associated with each nucleus of the system. Each atom has its own separate one-electron basis comprising the large basis set of the atom in question and the small basis sets for the partner atoms in the complex. The perturbed atoms in molecules and solids model is at core of the approach since it allows for the definition of perturbed atoms in a system. It ...
    • Cometary plasma science: Open science questions for future space missions 

      Goetz, Charlotte; Herbert, Gunell; Volwerk, Martin; A., Beth; et al, et al, 12 co-authors; Ericksson, A.; Eriksson, A.; Galand, M; Henri, P.; Nilsson, Hans; Simon Wedlund, Cyril; Alho, A.; Andersson, Laila A.; Andre, Nicolas; de Keyser, Johan; Deca, J.; Mann, Ingrid (Journal article; Tidsskriftartikkel; Peer reviewed, 2021-08-07)
      Comets hold the key to the understanding of our Solar System, its formation and its evolution, and to the fundamental plasma processes at work both in it and beyond it. A comet nucleus emits gas as it is heated by the sunlight. The gas forms the coma, where it is ionised, becomes a plasma, and eventually interacts with the solar wind. Besides these neutral and ionised gases, the coma also contains ...
    • Comets as a possible source of nanodust in the Solar System cloud and in planetary debris discs 

      Mann, Ingrid (Journal article; Tidsskriftartikkel; Peer reviewed, 2017-05-29)
      Comets, comet-like objects and their fragments are the most plausible source for the dust in both the inner heliosphere and planetary debris discs around other stars. The smallest size of dust particles in debris discs is not known and recent observational results suggest that the size distribution of the dust extends down to sizes of a few nanometres or a few tens of nanometres. In the Solar System, ...
    • Comparative net energy analysis of renewable electricity and carbon capture and storage 

      Sgouridis, Sgouris; Carbajales-Dale, Michael; Csala, Denes; Chiesa, Matteo; Bardi, Ugo (Journal article; Tidsskriftartikkel; Peer reviewed, 2019-04-08)
      Carbon capture and storage (CCS) for fossil-fuel power plants is perceived as a critical technology for climate mitigation. Nevertheless, limited installed capacity to date raises concerns about the ability of CCS to scale sufficiently. Conversely, scalable renewable electricity installations—solar and wind—are already deployed at scale and have demonstrated a rapid expansion potential. Here we show ...
    • A Comparative Study of PMETAC-Modified Mesoporous Silica and Titania Thin Films for Molecular Transport Manipulation 

      Alberti, Sebastian; Giussi, Juan; Azzaroni, Omar; Soler-Illia, Galo J. A. A. (Journal article; Tidsskriftartikkel; Peer reviewed, 2022-11-09)
      The manipulation and understanding of molecular transport across functionalized nanopores will take us closer to mimicking biological membranes and thus to design high-performance permselective separation systems. In this work, Surface-initiated atom transfer radical polymerization (SI-ATRP) of (2-methacryloyloxy)-ethyltrimethylammonium chloride (METAC) was performed on both mesoporous silica and ...
    • A comparative study of sea clutter covariance matrix estimators 

      Ding, Tao; Anfinsen, Stian Normann; Brekke, Camilla (Journal article; Tidsskriftartikkel; Peer reviewed, 2013-10-23)
      Estimation of the polarimetric covariance matrix is an important task in statistical modeling of sea clutter for maritime applications of polarimetric synthetic aperture radar (PolSAR) data. This work provides a comprehensive study of four covariance matrix estimators: the maximum likelihood estimators under the Gaussian distribution (G-ML) and the K distribution (K-ML), an approximation of the ...