• Advancing research for the management of long-lived species: A case study on the Greenland Shark 

      Edwards, Jena E.; Hiltz, Elizabeth; Broell, Franziska; Bushnell, Peter G.; Campana, Steven E.; Christiansen, Jørgen Schou; Devine, Brynn M.; Gallant, Jeffrey J.; Hedges, Kevin J.; MacNeil, M. Aaron; McMeans, Bailey C.; Nielsen, Julius; Præbel, Kim; Skomal, Gregory B.; Steffensen, John Fleng; Walter, Ryan P.; Watanabe, Yuuki Y.; VanderZwaag, David L.; Hussey, Nigel E. (Journal article; Tidsskriftartikkel; Peer reviewed, 2019-04-02)
      Long-lived species share life history traits such as slow growth, late maturity, and low fecundity, which lead to slow recovery rates and increase a population’s vulnerability to disturbance. The Greenland shark (Somniosus microcephalus) has recently been recognized as the world’s longest-lived vertebrate, but many questions regarding its biology, physiology, and ecology remain unanswered. Here we ...
    • Allelic losses and gains during translocations of a high conservation value fish, Coregonus lavaretus 

      Præbel, Kim; Bean, Colin; Dodd, Jennifer A.; Etheridge, Elizabeth C.; Gowans, Andrew R. D.; Knudsen, Rune; Lyle, Alexander A.; Maitland, Peter S.; Winfield, Ian J.; Adams, Colin E. (Journal article; Tidsskriftartikkel; Peer reviewed, 2021-06-09)
      <ol type="1"> <li>The use of translocations to establish new or ‘refuge’ populations for species with high conservation value is controversial but widely used in conservation management. One of the risks of this approach is that an establishing population does not adequately capture the genetic diversity of the donor gene pool. This effect, rarely examined, is tested here.</li> <li>In this study ...
    • Allochrony as a potential driver for reproductive isolation in adaptive radiations of European whitefish ecomorphs 

      Bitz-Thorsen, Julie; Häkli, Katja; Bhat, Shripathi; Præbel, Kim (Journal article; Tidsskriftartikkel; Peer reviewed, 2019-04-29)
      In northern Fennoscandian lakes, monophylogenetic lineages of postglacial fishes are radiating into several adaptive forms, but the speciation process is still at an incipient stage. The speciation process has received increased attention over the years, but the underlying mechanisms and drivers are still debated and poorly understood. European whitefish (<i>Coregonus lavaretus</i> [L.]) is the most ...
    • “And if you gaze long into an abyss, the abyss gazes also into thee ”: four morphs of Arctic charr adapting to a depth gradient in Lake Tinnsjøen 

      Østbye, Kjartan; Hassve, Marius Hagen; Tamayo, Ana-Maria Peris; Hagenlund, Mari; Vogler, Thomas; Præbel, Kim (Journal article; Tidsskriftartikkel; Peer reviewed, 2020-04-24)
      The origin of species is a central topic in biology. Ecological speciation might be a driver in adaptive radiation, providing a framework for understanding mechanisms, level, and rate of diversification. The Arctic charr <i>Salvelinus alpinus</i> L. is a polymorphic species with huge morphological and life‐history diversity in Holarctic water systems. We studied adaptive radiation of Arctic charr ...
    • Boreal marine fauna from the Barents sea disperse to Arctic Northeast Greenland 

      Andrews, Adam; Christiansen, Jørgen Schou; Bhat, Shripathi; Lynghammar, Arve; Westgaard, Jon-Ivar; Pampoulie, Christophe; Præbel, Kim (Journal article; Peer reviewed, 2019-04-09)
      As a result of ocean warming, the species composition of the Arctic seas has begun to shift in a boreal direction. one ecosystem prone to fauna shifts is the Northeast Greenland shelf. the dispersal route taken by boreal fauna to this area is, however, not known. This knowledge is essential to predict to what extent boreal biota will colonise Arctic habitats. Using population genetics, we show that ...
    • A brain and a head for a different habitat: Size variation in four morphs of Arctic charr (Salvelinus alpinus (L.)) in a deep oligotrophic lake 

      Tamayo, Ana-Maria Peris; Devineau, Olivier; Præbel, Kim; Kahilainen, Kimmo Kalevi; Østbye, Kjartan (Journal article; Tidsskriftartikkel; Peer reviewed, 2020-09-25)
      Adaptive radiation is the diversification of species to different ecological niches and has repeatedly occurred in different salmonid fish of postglacial lakes. In Lake Tinnsjøen, one of the largest and deepest lakes in Norway, the salmonid fish, Arctic charr (<i>Salvelinus alpinus</i> (L.)), has likely radiated within 9,700 years after deglaciation into ecologically and genetically segregated ...
    • A cold-water fish striving in a warming ocean: Insights from whole-genome sequencing of the Greenland halibut in the Northwest Atlantic 

      Ferchaud, Anne-Laure; Normandeau, Eric; Babin, Charles; Præbel, Kim; Hedeholm, Rasmus; Audet, Celine; Morgan, Joanne; Walkusz, Wojciech; Sirois, Pascal; Bernatchez, Louis (Journal article; Tidsskriftartikkel; Peer reviewed, 2022-09-02)
      Characterizing the extent of genetic differentiation among individuals and its distribution across the genome is increasingly important to inform both conservation and management of exploited species. The Greenland Halibut is one of the main demersal fish species to be commercially exploited in Eastern Canada, and accurate information on geographic population structure and local adaptation is required ...
    • Complex and divergent histories gave rise to genome-wide divergence patterns amongst European whitefish (Coregonus lavaretus) 

      Crotti, Marco; Bean, Colin W.; Gowans, Andy R. D.; Winfield, Ian J.; Butowska, Magdalena; Wanzenböck, Josef; Bondarencko, Galina; Præbel, Kim; Adams, Colin E.; Elmer, Kathryn R. (Journal article; Tidsskriftartikkel; Peer reviewed, 2021-10-15)
      Pleistocene glaciations dramatically affected species distribution in regions that were impacted by ice cover and subsequent postglacial range expansion impacted contemporary biodiversity in complex ways. The European whitefish, Coregonus lavaretus, is a widely distributed salmonid fish species on mainland Europe, but in Britain it has only seven native populations, all of which are found on the ...
    • Distinct genetic clustering in the weakly differentiated polar cod, Boreogadus saida Lepechin, 1774 from East Siberian Sea to Svalbard 

      Sanchez, Maria Quintela; Bhat, Shripathi; Præbel, Kim; Gordeeva, Natalia; Seljestad, Gaute Wilhelmsen; Hanebrekke, Tanja Lexau; Mateos-Rivera, Alejandro; Vikebø, Frode Bendiksen; Zelenia, Daria; Cheng, Chi-Hing Christina; Johansen, Torild (Journal article; Tidsskriftartikkel; Peer reviewed, 2021-07-03)
      The cold-adapted polar cod Boreogadus saida, a key species in Arctic ecosystems, is vulnerable to global warming and ice retreat. In this study, 1257 individuals sampled in 17 locations within the latitudinal range of 75–81°N from Svalbard to East Siberian Sea were genotyped with a dedicated suite of 116 single-nucleotide polymorphic loci (SNP). The overall pattern of isolation by distance (IBD) ...
    • Diversifying selection drives parallel evolution of gill raker number and body size along the speciation continuum of European whitefish 

      Häkli, Katja; Østbye, Kjartan; Kahilainen, Kimmo Kalevi; Amundsen, Per-Arne; Præbel, Kim (Journal article; Tidsskriftartikkel; Peer reviewed, 2018-02-05)
      Adaptive radiation is the evolution of ecological and phenotypical diversity. It arises via ecological opportunity that promotes the exploration of underutilized or novel niches mediating specialization and reproductive isolation. The assumed precondition for rapid local adaptation is diversifying natural selection, but random genetic drift could also be a major driver of this process. We used 27 ...
    • DNA Metabarcoding of Deep-Sea Sediment Communities Using COI: Community Assessment, Spatio-Temporal Patterns and Comparison with 18S rDNA 

      Atienza, Sara; Guardiola, Magdalena; Præbel, Kim; Antich, Adrià; Turon, Xavier; Wangensteen Fuentes, Owen Simon (Journal article; Tidsskriftartikkel; Peer reviewed, 2020-03-26)
      Among the complex ecosystems and habitats that form the deep sea, submarine canyons and open slope systems are regarded as potential hotspots of biodiversity. We assessed the spatial and temporal patterns of biodiversity in sediment communities of a NW Mediterranean Canyon and its adjacent open slope (Blanes Canyon) with DNA metabarcoding. We sampled three layers of sediment and four different depths ...
    • DNA metabarcoding reveals the importance of gelatinous zooplankton in the diet of Pandalus borealis, a keystone species in the Arctic 

      Urban, Paulina; Præbel, Kim; Bhat, Shripathi; Dierking, Jan; Wangensteen, Owen S. (Journal article; Tidsskriftartikkel; Peer reviewed, 2021-12-22)
      Information about the dietary composition of a species is crucial to understanding their position and role in the food web. Increasingly, molecular approaches such as DNA metabarcoding are used in studying trophic relationships, not least because they may alleviate problems such as low taxonomic resolution or underestimation of digestible taxa in the diet. Here, we used DNA metabarcoding with universal ...
    • DNA metabarcoding reveals the importance of gelatinous zooplankton in the diet of Pandalus borealis, a keystone species in the Arctic 

      Urban, Paulina; Præbel, Kim; Bhat, Shripathi; Dierking, Jan; Wangensteen Fuentes, Owen Simon (Journal article; Tidsskriftartikkel; Peer reviewed, 2021-12-22)
      Information about the dietary composition of a species is crucial to understanding their position and role in the food web. Increasingly, molecular approaches such as DNA metabarcoding are used in studying trophic relationships, not least because they may alleviate problems such as low taxonomic resolution or underestimation of digestible taxa in the diet. Here, we used DNA metabarcoding with ...
    • DNA metabarcoding unveils niche overlapping and competition among Caribbean sea urchins 

      Rodríguez-Barreras, Ruber; Godoy-Vitorino, Filipa; Præbel, Kim; Wangensteen, Owen S. (Journal article; Tidsskriftartikkel; Peer reviewed, 2020-11-10)
      Detailed information of trophic interactions among consumer–resources in food webs is usually limited due to the lack of accurate identification of eaten food resources. The use of DNA-metabarcoding has been proven useful for molecular identification of the numerous taxa present in stomach contents. Here, we characterize the diet and trophic behavior of four sea urchin species inhabiting shallow ...
    • Ecological speciation in European whitefish is driven by a large‐gaped predator 

      Öhlund, Gunnar; Bodin, Mats; Nilsson, Karin; Öhlund, Sven-Ola; Mobley, Kenyon B.; Hudson, Alan G.; Peedu, Mikael; Brännström, Åke; Bartels, Pia; Præbel, Kim; Hein, Catherine L.; Johansson, Petter; Englund, Göran (Journal article; Tidsskriftartikkel; Peer reviewed, 2020-05-13)
      Lake‐dwelling fish that form species pairs/flocks characterized by body size divergence are important model systems for speciation research. Although several sources of divergent selection have been identified in these systems, their importance for driving the speciation process remains elusive. A major problem is that in retrospect, we cannot distinguish selection pressures that initiated divergence ...
    • Environmental DNA: A New Low-Cost Monitoring Tool for Pathogens in Salmonid Aquaculture 

      Peters, Lucy; Spatharis, Sofie; Dario, Maria Augusta; Roca, Inaki Javier Tomey; Kintner, Anna; Kanstad-Hanssen, Øyvind; Llewellyn, Martin S.; Præbel, Kim (Journal article; Tidsskriftartikkel; Peer reviewed, 2018-12-07)
      Environmental DNA (eDNA) metabarcoding is a relatively new monitoring tool featuring in an increasing number of applications such as the facilitation of the accurate and cost effective detection of species in environmental samples. eDNA monitoring is likely to have a major impact on the ability of salmonid aquaculture industry producers and their regulators to detect the presence and abundance of ...
    • European marine omics biodiversity observation network: a strategic outline for the implementation of omics approaches in ocean observation 

      Santi, Ioulia; Beluche, Odette; Beraud, Mélanie; Buttigieg, Pier Luigi; Casotti, Raffaella; Cox, Cymon J.; Cunliffe, Michael; Davies, Neil; de Cerio, Oihane Diaz; Exter, Katrina; Kervella, Anne Emmanuelle; Kotoulas, Georgios; Lagaisse, Rune; Laroquette, Arnaud; Louro, Bruno; Not, Fabrice; Obst, Matthias; Pavloudi, Christina; Poulain, Julie; Præbel, Kim; Vanaverbeke, Jan; Pade, Nicolas (Journal article; Tidsskriftartikkel; Peer reviewed, 2023-05-18)
      Marine ecosystems, ranging from coastal seas and wetlands to the open ocean, accommodate a wealth of biological diversity from small microorganisms to large mammals. This biodiversity and its associated ecosystem function occurs across complex spatial and temporal scales and is not yet fully understood. Given the wide range of external pressures on the marine environment, this knowledge is crucial ...
    • Fine-scale differences in eukaryotic communities inside and outside salmon aquaculture cages revealed by eDNA metabarcoding 

      Turon, Marta; Nygaard, Markus; Guri, Gledis; Wangensteen, Owen S.; Præbel, Kim (Journal article; Tidsskriftartikkel; Peer reviewed, 2022-08-26)
      Aquaculture impacts on marine benthic ecosystems are widely recognized and monitored. However, little is known about the community changes occurring in the water masses surrounding aquaculture sites. In the present study, we studied the eukaryotic communities inside and outside salmonid aquaculture cages through time to assess the community changes in the neighbouring waters of the farm. Water ...
    • From metabarcoding to metaphylogeography: separating the wheat from the chaff 

      Turon, Xavier; Antich, Adrià; Palacín, Creu; Præbel, Kim; Wangensteen Fuentes, Owen Simon (Journal article; Tidsskriftartikkel; Peer reviewed, 2019-11-10)
      Metabarcoding is by now a well‐established method for biodiversity assessment in terrestrial, freshwater, and marine environments. Metabarcoding data sets are usually used for α‐ and β‐diversity estimates, that is, interspecies (or inter‐MOTU [molecular operational taxonomic unit]) patterns. However, the use of hypervariable metabarcoding markers may provide an enormous amount of intraspecies ...
    • Genetic fingerprinting of salmon louse (Lepeophtheirus salmonis) populations in the North-East Atlantic using a random forest classication approach 

      Jacobs, Arne; De Noia, M; Præbel, Kim; Kanstad-Hanssen, Øyvind; Paterno, M; Jackson, D; McGinnity, P; Sturm, Armin; Elmer, K. R.; Llewellyn, Martin (Journal article; Tidsskriftartikkel; Peer reviewed, 2018-01-19)
      Caligid sea lice represent a significant threat to salmonid aquaculture worldwide. Population genetic analyses have consistently shown minimal population genetic structure in North Atlantic <i>Lepeophtheirus salmonis</i>, frustrating efforts to track louse populations and improve targeted control measures. The aim of this study was to test the power of reduced representation library sequencing ...