Show simple item record

dc.contributor.authorHolm, Kåre Olav
dc.contributor.authorBækkedal, Cecilie
dc.contributor.authorJohansson Söderberg, Jenny
dc.contributor.authorHaugen, Peik
dc.date.accessioned2018-07-09T07:29:42Z
dc.date.available2018-07-09T07:29:42Z
dc.date.issued2018-04-07
dc.description.abstractWe report here the complete genome sequences of seven Vibrio anguillarum strains isolated from multiple geographic locations, thus increasing the total number of genomes of finished quality to 11. The genomes were de novo assembled from long-sequence PacBio reads. Including draft genomes, a total of 44 V. anguillarum genomes are currently available in the genome databases. They represent an important resource in the study of, for example, genetic variations and for identifying virulence determinants. In this article, we present the genomes and basic genome comparisons of the 11 complete genomes, including a BRIG analysis, and pan genome calculation. We also describe some structural features of superintegrons on chromosome 2 s, and associated insertion sequence (IS) elements, including 18 new ISs (ISVa3 − ISVa20), both of importance in the complement of V. anguillarum genomes.en_US
dc.description.sponsorshipUiT - The Arctic University of Norwayen_US
dc.description<a href=https://oup.silverchair-cdn.com/oup/backfile/Content_public/Journal/gbe/10/4/10.1093_gbe_evy074/1/evy074_supp.zip?Expires=2147483647&Signature=v6qPapSb9R8DGdxy~QVGjZlF2nymA3jm4g~Q9jqzPbCQtq-RrY3iNzyA1jJVsfa6jd3r-EpkKIOHhdsWyfppJqgHI3Utiwo0W8KMDAEBeC-k7SARnu0kFUcnhPI41oNbhGV7DdaUhMuCXWeKe8oeLmn4LsTa1i6AwskJEnY8xQ3zvzexgNGKdXcvXD5LwxukQZ69ptnSGDCCO9Gu4xzu9SqhPpidWDvl9ZtKO8uV3F9oyzEhHhZccTiy9QtZJc3gKAm98IRkPzbUCvB6exE3Yjf9KWJx8xaPQqiz7Ou2vJBFIF5N-DnldDOYXqjwO8hJA8IQJ-INwwhG7JE0-h9SVw__&Key-Pair-Id=APKAIE5G5CRDK6RD3PGA>Supplementary data</a> available.en_US
dc.identifier.citationHolm, K.O., Bækkedal, C., Johansson Söderberg, J. & Haugen, P. (2018). Complete Genome Sequences of Seven Vibrio anguillarum Strains as Derived from PacBio Sequencing. Genome Biology and Evolution, 10(4), 1127-1131. https://doi.org/10.1093/gbe/evy074.en_US
dc.identifier.cristinIDFRIDAID 1591994
dc.identifier.doi10.1093/gbe/evy074
dc.identifier.issn1759-6653
dc.identifier.urihttps://hdl.handle.net/10037/13182
dc.language.isoengen_US
dc.publisherOxford University Press (OUP)en_US
dc.relation.ispartofSonnenberg, C.B. (2023). Exploring multipartite genomes using pangenome analysis. (Doctoral thesis). <a href=https://hdl.handle.net/10037/29372>https://hdl.handle.net/10037/29372</a>.
dc.relation.journalGenome Biology and Evolution
dc.relation<a href=https://oup.silverchair-cdn.com/oup/backfile/Content_public/Journal/gbe/10/4/10.1093_gbe_evy074/1/evy074_supp.zip?Expires=2147483647&Signature=v6qPapSb9R8DGdxy~QVGjZlF2nymA3jm4g~Q9jqzPbCQtq-RrY3iNzyA1jJVsfa6jd3r-EpkKIOHhdsWyfppJqgHI3Utiwo0W8KMDAEBeC-k7SARnu0kFUcnhPI41oNbhGV7DdaUhMuCXWeKe8oeLmn4LsTa1i6AwskJEnY8xQ3zvzexgNGKdXcvXD5LwxukQZ69ptnSGDCCO9Gu4xzu9SqhPpidWDvl9ZtKO8uV3F9oyzEhHhZccTiy9QtZJc3gKAm98IRkPzbUCvB6exE3Yjf9KWJx8xaPQqiz7Ou2vJBFIF5N-DnldDOYXqjwO8hJA8IQJ-INwwhG7JE0-h9SVw__&Key-Pair-Id=APKAIE5G5CRDK6RD3PGA>Supplementary material</a>en
dc.rights.accessRightsopenAccessen_US
dc.subjectVibrio anguillarumen_US
dc.subjectchromosomal integronsen_US
dc.subjectintegrasesen_US
dc.subjectinsertion sequencesen_US
dc.subjectIS-elementsen_US
dc.subjectPacBio sequencingen_US
dc.subjectVDP::Matematikk og Naturvitenskap: 400::Basale biofag: 470::Bioinformatikk: 475en_US
dc.subjectVDP::Mathematics and natural science: 400::Basic biosciences: 470::Bioinformatics: 475en_US
dc.titleComplete Genome Sequences of Seven Vibrio anguillarum Strains as Derived from PacBio Sequencingen_US
dc.typeJournal articleen_US
dc.typeTidsskriftartikkelen_US
dc.typePeer revieweden_US


File(s) in this item

Thumbnail

This item appears in the following collection(s)

Show simple item record