• Environmental DNA: A New Low-Cost Monitoring Tool for Pathogens in Salmonid Aquaculture 

      Peters, Lucy; Spatharis, Sofie; Dario, Maria Augusta; Roca, Inaki Javier Tomey; Kintner, Anna; Kanstad-Hanssen, Øyvind; Llewellyn, Martin S.; Præbel, Kim (Journal article; Tidsskriftartikkel; Peer reviewed, 2018-12-07)
      Environmental DNA (eDNA) metabarcoding is a relatively new monitoring tool featuring in an increasing number of applications such as the facilitation of the accurate and cost effective detection of species in environmental samples. eDNA monitoring is likely to have a major impact on the ability of salmonid aquaculture industry producers and their regulators to detect the presence and abundance of ...
    • European marine omics biodiversity observation network: a strategic outline for the implementation of omics approaches in ocean observation 

      Santi, Ioulia; Beluche, Odette; Beraud, Mélanie; Buttigieg, Pier Luigi; Casotti, Raffaella; Cox, Cymon J.; Cunliffe, Michael; Davies, Neil; de Cerio, Oihane Diaz; Exter, Katrina; Kervella, Anne Emmanuelle; Kotoulas, Georgios; Lagaisse, Rune; Laroquette, Arnaud; Louro, Bruno; Not, Fabrice; Obst, Matthias; Pavloudi, Christina; Poulain, Julie; Præbel, Kim; Vanaverbeke, Jan; Pade, Nicolas (Journal article; Tidsskriftartikkel; Peer reviewed, 2023-05-18)
      Marine ecosystems, ranging from coastal seas and wetlands to the open ocean, accommodate a wealth of biological diversity from small microorganisms to large mammals. This biodiversity and its associated ecosystem function occurs across complex spatial and temporal scales and is not yet fully understood. Given the wide range of external pressures on the marine environment, this knowledge is crucial ...
    • Fauna crime: elucidating the potential source and introduction history of European smelt (Osmerus eperlanus L.) into Lake Storsjøen, Norway 

      Hagenlund, Mari; Østbye, Kjartan; Langdal, Kjell; Hassve, Marius Hagen; Pettersen, Ruben Alexander; Anderson, Eric; Gregersen, Finn; Præbel, Kim (Journal article; Tidsskriftartikkel; Peer reviewed, 2015-05-01)
      The ability to accurately determine the original source of invading species offers several powerful applications in invasive species ecology and management and may enable important information on the invading species in its native habitat. Lake Storsjøen in South-Central Norway was recently found to have been subjected to an illegal translocation of the European smelt (Osmerus eperlanus). The ...
    • Fine-scale differences in eukaryotic communities inside and outside salmon aquaculture cages revealed by eDNA metabarcoding 

      Turon, Marta; Nygaard, Markus; Guri, Gledis; Wangensteen, Owen S.; Præbel, Kim (Journal article; Tidsskriftartikkel; Peer reviewed, 2022-08-26)
      Aquaculture impacts on marine benthic ecosystems are widely recognized and monitored. However, little is known about the community changes occurring in the water masses surrounding aquaculture sites. In the present study, we studied the eukaryotic communities inside and outside salmonid aquaculture cages through time to assess the community changes in the neighbouring waters of the farm. Water ...
    • From clear lakes to murky waters – tracing the functional response of high-latitude lake communities to concurrent ‘greening’ and ‘browning’ 

      Hayden, B.; Harrod, C.; Thomas, S.M.; Eloranta, Antti; Myllykangas, J.‐P.; Siwertsson, Anna; Præbel, Kim; Knudsen, Rune; Amundsen, Per-Arne; Kahilainen, Kimmo Kalevi (Journal article; Tidsskriftartikkel; Peer reviewed, 2019-02-21)
      Climate change and the intensification of land use practices are causing widespread eutrophication of subarctic lakes. The implications of this rapid change for lake ecosystem function remain poorly understood. To assess how freshwater communities respond to such profound changes in their habitat and resource availability, we conducted a space‐for‐time analysis of food‐web structure in 30 lakes ...
    • From metabarcoding to metaphylogeography: separating the wheat from the chaff 

      Turon, Xavier; Antich, Adrià; Palacín, Creu; Præbel, Kim; Wangensteen Fuentes, Owen Simon (Journal article; Tidsskriftartikkel; Peer reviewed, 2019-11-10)
      Metabarcoding is by now a well‐established method for biodiversity assessment in terrestrial, freshwater, and marine environments. Metabarcoding data sets are usually used for α‐ and β‐diversity estimates, that is, interspecies (or inter‐MOTU [molecular operational taxonomic unit]) patterns. However, the use of hypervariable metabarcoding markers may provide an enormous amount of intraspecies ...
    • Genetic fingerprinting of salmon louse (Lepeophtheirus salmonis) populations in the North-East Atlantic using a random forest classication approach 

      Jacobs, Arne; De Noia, M; Præbel, Kim; Kanstad-Hanssen, Øyvind; Paterno, M; Jackson, D; McGinnity, P; Sturm, Armin; Elmer, K. R.; Llewellyn, Martin (Journal article; Tidsskriftartikkel; Peer reviewed, 2018-01-19)
      Caligid sea lice represent a significant threat to salmonid aquaculture worldwide. Population genetic analyses have consistently shown minimal population genetic structure in North Atlantic <i>Lepeophtheirus salmonis</i>, frustrating efforts to track louse populations and improve targeted control measures. The aim of this study was to test the power of reduced representation library sequencing ...
    • Genetic population structure and variation at phenology‐related loci in anadromous Arctic char (Salvelinus alpinus) 

      Madsen, Rikke; Jacobsen, Magnus W; O´Malley, Kathleen G; Nygaard, Rasmus; Præbel, Kim; Jonsson, Bjarni; Pujolar, Jose M; Fraser, Dylan J; Bernatchez, Louis; Hansen, Michael M (Journal article; Tidsskriftartikkel; Peer reviewed, 2019-10-03)
      The Arctic will be especially affected by climate change, resulting in altered seasonal timing. Anadromous Arctic char (<i>Salvelinus alpinus</i>) is strongly influenced by sea surface temperature (SST) delimiting time periods available for foraging in the sea. Recent studies of salmonid species have shown variation at phenology‐related loci associated with timing of migration and spawning. We ...
    • Genome-resolved metagenomics suggests a mutualistic relationship between Mycoplasma and salmonid hosts 

      Rasmussen, Jacob A.; Villumsen, Kasper Rømer; Duchêne, David; Puetz, Lara; Delmont, Tom; Sveier, Harald; von Gersdorff Jørgensen, Louise; Præbel, Kim; Martin, Michael David; Bojesen, Anders Miki; Gilbert, Marcus Thomas Pius; Kristiansen, Karsten; Limborg, Morten T. (Journal article; Tidsskriftartikkel; Peer reviewed, 2021-05-14)
      Salmonids are important sources of protein for a large proportion of the human population. Mycoplasma species are a major constituent of the gut microbiota of salmonids, often representing the majority of microbiota. Despite the frequent reported dominance of salmonid-related Mycoplasma species, little is known about the phylogenomic placement, functions and potential evolutionary relationships with ...
    • Geographic hierarchical population genetic structuring in British European whitefish (Coregonus lavaretus) and its implications for conservation 

      Crotti, M; Adams, Colin Ean; Etheridge, Elizabeth C.; Bean, Colin W.; Gowans, Andrew R.D.; Knudsen, Rune; Lyle, Alex A.; Maitland, P. S.; Winfield, Ian J.; Elmer, K. R.; Præbel, Kim (Journal article; Tidsskriftartikkel; Peer reviewed, 2020-08-04)
      The European whitefish <i>Coregonus lavaretus</i> complex represents one of the most diverse radiations within salmonids, with extreme morphological and genetic differentiation across its range. Such variation has led to the assignment of many populations to separate species. In Great Britain, the seven native populations of <i>C. lavaretus</i> (two in Scotland, four in England, one in Wales) were ...
    • Greenland Shark (Somniosus microcephalus) stomach contents and stable isotope values reveal an ontogenetic dietary shift 

      Nielsen, Julius; Christiansen, Jørgen Schou; Grønkjær, Peter; Bushnell, Peter G.; Steffensen, John Fleng; Kiilerich, Helene O.; Præbel, Kim; Hedeholm, Rasmus (Journal article; Tidsskriftartikkel; Peer reviewed, 2019-04-04)
      Current knowledge on the feeding ecology of the Greenland shark (<i>Somniosus microcephalus</i>), a potential top predator in arctic marine ecosystems, is based on small sample sizes as well as narrow size ranges of sharks. Therefore, potential size-related feeding patterns remain poorly documented. Using stomach content data (<i>N</i> = 88) and stable isotope values of white muscle tissue (<i>N</i> ...
    • Homing behaviour of Atlantic salmon (Salmo salar) during final phase of marine migration and river entry 

      Davidsen, Jan Grimsrud; Rikardsen, Audun H.; Thorstad, Eva Bonsak; Halttunen, Elina; Mitamura, Hiromichi; Præbel, Kim; Skardhamar, Jofrid; Næsje, Tor (Journal article; Tidsskriftartikkel; Peer reviewed, 2013)
      Little is known about Atlantic salmon behaviour during the last phase of the marine homing migration and subsequent river entry. In this study, 56 adult Atlantic salmon in the Alta Fjord in northern Norway were equipped with acoustic transmitters. Salmon generally followed the coastline, but their horizontal distribution was also affected by wind-induced spreading of river water across the fjord. ...
    • Immunostimulant Bathing Influences the Expression of Immune- and Metabolic-Related Genes in Atlantic Salmon Alevins 

      Figueiredo, Filipe; Kristoffersen, Harald; Bhat, Shripathi; Zhang, Zuobing; Godfroid, Jacques; Peruzzi, Stefano; Præbel, Kim; Dalmo, Roy Ambli; Xu, Xiaoli (Journal article; Tidsskriftartikkel; Peer reviewed, 2021-09-29)
      Disease resistance of fish larvae may be improved by bath treatment in water containing immunostimulants. Pattern recognition receptors, such as TLR3, TLR7, and MDA5, work as an “early warning” to induce intracellular signaling and facilitate an antiviral response. A single bath of newly hatched larvae, with Astragalus, upregulated the expression of IFNα, IFNc, ISG15, MDA5, PKR, STAT1, TLR3, and ...
    • Invader population speeds up life history during colonization 

      Amundsen, Per-Arne; Salonen, Erno; Niva, Teuvo; Gjelland, Karl Øystein; Præbel, Kim; Sandlund, Odd Terje; Knudsen, Rune; Bøhn, Thomas (Journal article; Tidsskriftartikkel; Peer reviewed, 2012)
      We explore the long-term developments in population biology and life history during the invasion and establishment of the fish species vendace Coregonus albula in a subarctic watercourse by comparing life-history traits and molecular genetic estimates between the source and the colonist population. The two populations exhibited highly contrasting life-history strategies. Relative to the source ...
    • Invasion genetics of vendace (Coregonus albula (L.)) in the Inari-Pasvik watercourse: revealing the origin and expansion pattern of a rapid colonization event 

      Præbel, Kim; Gjelland, Karl Øystein; Salonen, Erno; Amundsen, Per-Arne (Journal article; Tidsskriftartikkel; Peer reviewed, 2013)
      Species invasions can have wide-ranging biological and socio-economic effects and are generally unwanted by legislation. Identification of the source population as well as the ecology and genetics of both the invader population and the receiving community is of crucial importance. The rapid invasion of a small coregonid fish vendace (Coregonus albula) in a major northern European subarctic watercourse ...
    • Maximizing sampling efficiency to detect differences in fish community composition using environmental DNA metabarcoding in subarctic fjords 

      Guri, Gledis; Westgaard, Jon-Ivar; Yoccoz, Nigel; Wangensteen, Owen S.; Præbel, Kim; Ray, Jessica Louise; Kelly, Ryan P.; Shelton, Andrew Olaf; Hanebrekke, Tanja Lexau; Johansen, Torild (Journal article; Tidsskriftartikkel; Peer reviewed, 2023-04-14)
      Environmental DNA (eDNA) has gained popularity as a tool for ecosystem biomonitoring and biodiversity assessment. Although much progress has been made regarding laboratory and fieldwork protocols, the issue of sampling efficiency requires further investigation, particularly in three-dimensional marine systems. This study focuses on fish community composition in marine ecosystems and aims to analyze ...
    • Meroplankton Diversity, Seasonality and Life-History Traits Across the Barents Sea Polar Front Revealed by High-Throughput DNA Barcoding 

      Descôteaux, Raphaëlle; Ershova, Elizaveta; Wangensteen, Owen S.; Præbel, Kim; Renaud, Paul Eric; Cottier, Finlo Robert; Bluhm, Bodil (Journal article; Tidsskriftartikkel; Peer reviewed, 2021-05-28)
      In many species of marine benthic invertebrates, a planktonic larval phase plays a critical role in dispersal. Very little is known about the larval biology of most species, however, in part because species identification has historically been hindered by the microscopic size and morphological similarity among related taxa. This study aimed to determine the taxonomic composition and seasonal ...
    • Metabarcoding as a quantitative tool for estimating biodiversity and relative biomass of marine zooplankton 

      Ershova, Elizaveta; Wangensteen, Owen S.; Descoteaux, Raphaelle; Barth-Jensen, Coralie Marie Christine; Præbel, Kim (Journal article; Tidsskriftartikkel; Peer reviewed, 2021-08-31)
      Although metabarcoding is a well-established tool for describing diversity of pelagic communities, its quantitative value is still controversial, with poor correlations previously reported between organism abundance/biomass and sequence reads. In this study, we explored an enhanced quantitative approach by metabarcoding whole zooplankton communities using a highly degenerate primer set for the ...
    • Molecular tools prove little auks from Svalbard are extremely selective for Calanus glacialis even when exposed to Atlantification 

      Balazy, Kaja; Trudnowska, Emilia; Wojczulanis-Jakubas, Katarzyna; Jakubas, Dariusz; Præbel, Kim; Choquet, Marvin; Brandner, Melissa Michelle; Schultz, Mads; Bitz-Thorsen, Julie; Boehnke, Rafał; Szeligowska, Marlena; Descamps, Sebastien; Strøm, Hallvard; Blachowiak-Samolyk, Kasia (Journal article; Tidsskriftartikkel; Peer reviewed, 2023-08-22)
      Two Calanus species, C. glacialis and C. finmarchicus, due to different life strategies and environmental preferences act as an ecological indicators of Arctic Atlantification. Their high lipid content makes them important food source for higher trophic levels of Arctic ecosystems including the most abundant Northern Hemisphere's seabird, the little auk (Alle alle). Recent studies indicate a critical ...
    • Monitoring bacterial community dynamics in a drinking water treatment plant: an integrative approach using metabarcoding and microbial indicators in large water volumes 

      Pinar-Méndez, Anna; Wangensteen, Owen S.; Præbel, Kim; Galofré, Belén; Méndez, Javier; Blanch, Anicet R.; García-Aljaro, Cristina (Journal article; Tidsskriftartikkel; Peer reviewed, 2022-04-30)
      Monitoring bacterial communities in a drinking water treatment plant (DWTP) may help to understand their regular operations. Bacterial community dynamics in an advanced full-scale DWTP were analyzed by 16S rRNA metabarcoding, and microbial water quality indicators were determined at nine different stages of potabilization: river water and groundwater intake, decantation, sand filtration, ozonization, ...