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Dalton Project: A Python platform for molecular- and electronic-structure simulations of complex systems

Permanent link
https://hdl.handle.net/10037/18566
DOI
https://doi.org/10.1063/1.5144298
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Published version (PDF)
Date
2020-06-05
Type
Journal article
Tidsskriftartikkel
Peer reviewed

Author
Olsen, Jógvan Magnus Haugaard; Reine, Simen Sommerfelt; Vahtras, Olav; Kjellgren, Erik; Reinholdt, Peter; Dundas, Karen O.H; Li, Xin; Cukras, Janusz; Ringholm, Magnus; Hedegård, Erik Donovan; Di Remigio, Roberto; List, Nanna H.; Faber, Rasmus; Tenorio, Bruno Nunes Cabral; Bast, Radovan; Pedersen, Thomas Bondo; Rinkevicius, Zilvinas; Sauer, Stephan P. A.; Mikkelsen, Kurt V.; Kongsted, Jacob; Coriani, Sonia; Ruud, Kenneth; Helgaker, Trygve; Jensen, Hans Jørgen Aa.; Norman, Patrick
Abstract
The Dalton Project provides a uniform platform access to the underlying full-fledged quantum chemistry codes Dalton and LSDalton as well as the PyFraME package for automatized fragmentation and parameterization of complex molecular environments. The platform is written in Python and defines a means for library communication and interaction. Intermediate data such as integrals are exposed to the platform and made accessible to the user in the form of NumPy arrays, and the resulting data are extracted, analyzed, and visualized. Complex computational protocols that may, for instance, arise due to a need for environment fragmentation and configuration-space sampling of biochemical systems are readily assisted by the platform. The platform is designed to host additional software libraries and will serve as a hub for future modular software development efforts in the distributed Dalton community.
Is part of
Dundas, K.O.H.M. (2021). Vibrational spectroscopy beyond the harmonic approximation with the Polarizable Embedding model. (Doctoral thesis). https://hdl.handle.net/10037/20569.
Publisher
AIP Publishing
Citation
Olsen JMH, Reine SS, Vahtras O, Kjellgren, Reinholdt P, Dundas KOH, Li X, Cukras J, Ringholm M, Hedegård ED, Di Remigio RDR, List NH, Faber R, Tenorio, Bast R, Pedersen TB, Rinkevicius Z, Sauer SPA, Mikkelsen KV, Kongsted J, Coriani S, Ruud K, Helgaker T, Jensen HJA, Norman P. Dalton Project: A Python platform for molecular- and electronic-structure simulations of complex systems. Journal of Chemical Physics. 2020;152(21)
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