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    • QresFEP: An Automated Protocol for Free Energy Calculations of Protein Mutations in Q 

      Jespers, Willem; Isaksen, Geir Villy; Andberg, Tor Arne Heim; Vasile, Silvana; van Veen, Amber; Åqvist, Johan; Brandsdal, Bjørn Olav; Gutiérrez-de-Terán, Hugo (Journal article; Tidsskriftartikkel; Peer reviewed, 2019-08-22)
      Predicting the effect of single-point mutations on protein stability or protein−ligand binding is a major challenge in computational biology. Free energy calculations constitute the most rigorous approach to this problem, though the estimation of converged values for amino acid mutations remains challenging. To overcome this limitation, we developed tailored protocols to calculate free energy ...
    • QTAIM analysis dataset for non-covalent interactions in curan clusters 

      Malloum, Alhadji; Conradie, Jeanet (Journal article; Tidsskriftartikkel; Peer reviewed, 2021-12-21)
      Furan clusters are very important to understand the dynam- ics and properties of the furan solvent. They can be used combined with quantum cluster equilibrium theory to theo- retically determine the thermodynamics properties of the fu- ran solvent. To understand the structures of the furan clus- ters, one needs to understand the non-covalent interactions that hold the furan molecules together. ...
    • Quantifying Intramolecular Basis Set Superposition Errors 

      Pitteloud, Quentin Grégoire; Wind, Peter Ariaan; Jensen, Stig Rune; Frediani, Luca; Jensen, Frank (Journal article; Tidsskriftartikkel; Peer reviewed, 2023-08-18)
      We show that medium-sized Gaussian basis sets lead to significant intramolecular basis set superposition errors at Hartree–Fock and density functional levels of theory, with artificial stabilization of compact over extended conformations for a 186 atom deca-peptide. Errors of ∼80 and ∼10 kJ/mol are observed, with polarized double zeta and polarized triple zeta quality basis sets, respectively. Two ...
    • Quantitative at-line monitoring of enzymatic hydrolysis using benchtop diffusion nuclear magnetic resonance spectroscopy 

      McCarney, Evan R.; Kristoffersen, Kenneth Aase; Anderssen, Kathryn Elizabeth (Journal article; Tidsskriftartikkel; Peer reviewed, 2024-01-18)
      Benchtop diffusion nuclear magnetic resonance (NMR) spectroscopy was used to perform quantitative monitoring of enzymatic hydrolysis. The study aimed to test the feasibility of the technology to characterize enzymatic hydrolysis processes in real time. Diffusion ordered spectroscopy (DOSY) was used to measure the signal intensity and apparent self-diffusion constant of solubilized protein in ...
    • The quantitative level of T315I mutated BCR-ABL predicts for major molecular response to second-line nilotinib or dasatinib treatment in patients with chronic myeloid leukemia 

      Lange, Thoralf; Ernst, Thomas; Gruber, Franz; Maier, Jacqueline; Cross, Michael; Müller, Martin C.; Niederwieser, Dietger; Hochhaus, Andreas; Pfirrmann, Markus (Journal article; Tidsskriftartikkel; Peer reviewed, 2013-05)
      The BCR-ABL T315I mutation causes resistance to imatinib, nilotinib and dasatinib in chronic myeloid leukemia. Forty BCR-ABL positive patients with imatinib resistance were analyzed for T315I mutated clones after six months on nilotinib or dasatinib treatment by quantitative allele-specific ligation polymerase chain reaction with a sensitivity of 0.05%. Ligation polymerase chain reaction revealed ...
    • Quantum chemical studies of asymmetric reactions: Historical aspects and recent examples 

      Hopmann, Kathrin Helen (Journal article; Tidsskriftartikkel; Peer reviewed, 2015-02-18)
      Asymmetric catalysis is essential for the synthesis of chiral compounds such as pharmaceuticals, agrochemicals, fragrances, and flavors. For rational improvement of asymmetric reactions, detailed mechanistic insights are required. The usefulness of quantum mechanical (QM) studies for understanding the stereocontrol of asymmetric reactions was first demonstrated around 40 years ago, with impressive ...
    • Radical Group Transfer of Vinyl and Alkynyl Silanes Driven by Photoredox Catalysis 

      Baussiere, Floriane; Haugland, Marius Myreng (Journal article; Tidsskriftartikkel; Peer reviewed, 2023-08-15)
      Radical group transfer is a powerful tool for the formation of C−C bonds. These processes typically involve radical addition to C−C π bonds, followed by fragmentation of the resulting cyclic intermediate. Despite the advantageous lability of organosilanes in this context, silicon-tethered radical acceptor groups have remained underexplored in radical group transfer reactions. We report a general ...
    • Raman spectroscopy online monitoring of biomass production, intracellular metabolites and carbon substrates during submerged fermentation of oleaginous and carotenogenic microorganisms 

      Dzurendová, Simona; Olsen, Pernille Margrethe; Byrtusova, Dana; Tafintseva, Valeria; Shapaval, Volha; Horn, Svein Jarle; Kohler, Achim; Szotkowski, Martin; Marova, Ivana; Zimmermann, Boris (Journal article; Tidsskriftartikkel; Peer reviewed, 2023-12-18)
      Background - Monitoring and control of both growth media and microbial biomass is extremely important for the development of economical bioprocesses. Unfortunately, process monitoring is still dependent on a limited number of standard parameters (pH, temperature, gasses etc.), while the critical process parameters, such as biomass, product and substrate concentrations, are rarely assessable in-line. ...
    • Rare and Nonexistent Nitrosyls: Periodic Trends and Relativistic Effects in Ruthenium and Osmium Porphyrin-Based {MNO}7 Complexes 

      Demissie, Taye Beyene; Conradie, Jeanet; Vazquez-Lima, Hugo; Ruud, Kenneth; Ghosh, Abhik (Journal article; Tidsskriftartikkel; Peer reviewed, 2018-12-14)
      Relativistic and nonrelativistic density functional theory calculations were used to investigate rare or nonexistent ruthenium and osmium analogues of nitrosylhemes. Strong ligand field effects and, to a lesser degree, relativistic effects were found to destabilize {RuNO}<sup>7</sup> porphyrins relative to their {FeNO}<sup>7</sup> analogues. Substantially stronger relativistic effects account for ...
    • Rational selection of co-catalysts for the deaminative hydrogenation of amides 

      Artús Suàrez, Lluís; Jayarathne, Upul; Balcells, David; Bernskoetter, Wesley H.; Hazari, Nilay; Jaraiz, Martin; Nova, Ainara (Journal article; Tidsskriftartikkel; Peer reviewed, 2020-01-20)
      The catalytic hydrogenation of amides is an atom economical method to synthesize amines. Previously, it was serendipitously discovered that the combination of a secondary amide co-catalyst with (<sup>iPr</sup>PNP)Fe(H)(CO) (<sup>iPr</sup>PNP = N[CH<sub>2</sub>CH<sub>2</sub>(P<sup>i</sup>Pr<sub>2</sub>)]<sub>2</sub>−), results in a highly active base metal system for deaminative amide hydrogenation. ...
    • Real-space numerical grid methods in quantum chemistry 

      Frediani, Luca; Sundholm, Dage (Journal article; Tidsskriftartikkel; Peer reviewed, 2015-11-03)
    • A really close look at molecules 

      Svenson, Johan (Journal article; Tidsskriftartikkel, 2013)
      With a “magnifying glass”, a highly sophisticated atomic force microscope (AFM) scientists have recently developed a technique that allows single molecule visualization with atomic resolution.
    • Recolonization and recovery of an Arctic benthic community subject to mine-tailings deposits 

      Trannum, Hilde C; Pedersen, Kristine B.; Renaud, Paul E; Christensen, Guttorm N.; Evenset, Anita (Journal article; Tidsskriftartikkel; Peer reviewed, 2022-12-22)
      Deposition of large volumes of mine tailings takes place in several Norwegian fjords, but the impacts on marine ecosystems have received relatively little scientific attention. At a 40 + − year old tailing deposition area for a copper mine in the Arctic fjord Repparfjorden, we investigated both short-term colonization of mine tailingscontaminated sediments through a field experiment, and the present ...
    • Recombinant expression and purification of an ATP-dependent DNA ligase from Aliivibrio salmonicida 

      Williamson, Adele Kim; Pedersen, Hege (Journal article; Tidsskriftartikkel; Peer reviewed, 2014-05)
      The genome of the psychrophilic fish-pathogen Aliivibrio salmonicida encodes a putative ATP-dependent DNA ligase in addition to a housekeeping NAD-dependent enzyme. In order to study the structure and activity of the ATP dependent ligase in vitro we have undertaken its recombinant production and purification from an Escherichia coli based expression system. Expression and purification of this ...
    • Redetermination and H-atom refinement of (S)-(+)-ibuprofen. Corrigendum 

      Hansen, Lars Kr; Perlovich, German; Bauer-Brandl, Annette (Journal article; Tidsskriftartikkel; Peer reviewed, 2006)
      [Erratum to document cited in CA140:010932]
    • Redetermination of 3-hydroxybenzamide 

      Hansen, Lars Kr; Perlovich, German; Bauer-Brandl, Annette (Journal article; Tidsskriftartikkel; Peer reviewed, 2007)
    • Redetermination of p-ethoxyacetanilide (phenacetin) 

      Hansen, Lars Kr; Perlovich, German; Bauer-Brandl, Annette D (Journal article; Tidsskriftartikkel; Peer reviewed, 2006)
    • Regiodivergent Synthesis of 11H-Indolo[3,2-c]quinolines and Neocryptolepine from a Common Starting Material 

      Håheim, Katja Stangeland; Lund, Bjarte Aarmo; Sydnes, Magne Olav (Journal article; Tidsskriftartikkel; Peer reviewed, 2023-02-23)
      A large number of diversely functionalized analogs of the bioactive natural products neocryptolepine and isocryptolepine have been prepared from a series of 3-bromoquinoline derivatives. The neocryptolepines were obtained by a Pd<sup>0</sup>-catalyzed C−C bond coupling followed by C−N bond formation in yields up to 80 %, whereas the indoloquinolines were prepared by a Suzuki-Miyaura cross-coupling ...
    • Regioselective formylation of rhenium-oxo and gold corroles: Substituent effects on optical spectra and redox potentials 

      Einrem, Rune F.; Jonsson, Einar Torfi; Teat, Simon J.; Settineri, Nicholas S.; Alemayehu, Abraham B.; Ghosh, Abhik (Journal article; Tidsskriftartikkel; Peer reviewed, 2021-10-28)
      Vilsmeier–Haack formylation of ReO and Au meso-triarylcorroles over 16–18 hours affords moderate to good yields (47–65%) of the ReO-3-formyl and Au-3,17-diformyl derivatives in a highly regioselective manner. Formylation was found to effect substantial upshifts for redox potentials (especially the reduction potentials) as well as significant to dramatic redshifts for both the Soret and Q bands.
    • Relativistic DFT Calculations of Hyperfine Coupling Constants in 5d Hexafluorido Complexes: [ReF6]2- and [IrF6]2- 

      Haase, Pi A. B.; Repisky, Michal; Komorovsky, Stanislav; Bendix, Jesper; Sauer, Stephan P. A. (Journal article; Tidsskriftartikkel; Peer reviewed, 2017-10-12)
      The performance of relativistic density functional theory (DFT) methods has been investigated for the calculation of the recently measured hyperfine coupling constants of hexafluorido complexes [ReF<sub>6</sub> ] <sup>2-</sup> and [IrF<sub>6</sub> ] <sup>2-</sup> . Three relativistic methods were employed at the DFT level of theory: the 2-component zeroth-order regular approximation ...