Complete Genome Sequences of 12 Quinolone-Resistant Escherichia coli Strains Containing qnrS1 Based on Hybrid Assemblies

Permanent link
https://hdl.handle.net/10037/21430
DOI
https://doi.org/10.1128/MRA.01190-20
Thumbnail
View/Open
Published version (PDF)
Date
2021-01-28
Type
Journal article
Tidsskriftartikkel
Peer reviewed

Author
Kaspersen, Håkon; Haverkamp, Thomas Hendricus Augustus; Ilag, Hanna Karin; Øines, Øivind; Sekse, Camilla; Slettemeås, Jannice Schau
Abstract
In total, 12 quinolone-resistant Escherichia coli (QREC) strains containing qnrS1 were submitted to long-read sequencing using a FLO-MIN106 flow cell on a MinION device. The long reads were assembled with short reads (Illumina) and analyzed using the MOB-suite pipeline. Six of these QREC genome sequences were closed after hybrid assembly.
Publisher
American Society for Microbiology
Citation
Kaspersen, Haverkamp, Ilag, Øines, Sekse, Slettemeås. Complete Genome Sequences of 12 Quinolone-Resistant Escherichia coli Strains Containing qnrS1 Based on Hybrid Assemblies. Microbiology Resource Announcements (MRA). 2021
Metadata
Show full item record
Collections
Copyright 2021 The Author(s)