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Genome-resolved metagenomics suggests a mutualistic relationship between Mycoplasma and salmonid hosts

Permanent link
https://hdl.handle.net/10037/22977
DOI
https://doi.org/10.1038/s42003-021-02105-1
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Date
2021-05-14
Type
Journal article
Tidsskriftartikkel
Peer reviewed

Author
Rasmussen, Jacob A.; Villumsen, Kasper Rømer; Duchêne, David; Puetz, Lara; Delmont, Tom; Sveier, Harald; von Gersdorff Jørgensen, Louise; Præbel, Kim; Martin, Michael David; Bojesen, Anders Miki; Gilbert, Marcus Thomas Pius; Kristiansen, Karsten; Limborg, Morten T.
Abstract
Salmonids are important sources of protein for a large proportion of the human population. Mycoplasma species are a major constituent of the gut microbiota of salmonids, often representing the majority of microbiota. Despite the frequent reported dominance of salmonid-related Mycoplasma species, little is known about the phylogenomic placement, functions and potential evolutionary relationships with their salmonid hosts. In this study, we utilise 2.9 billion metagenomic reads generated from 12 samples from three different salmonid host species to I) characterise and curate the first metagenome-assembled genomes (MAGs) of Mycoplasma dominating the intestines of three different salmonid species, II) establish the phylogeny of these salmonid candidate Mycoplasma species, III) perform a comprehensive pangenomic analysis of Mycoplasma, IV) decipher the putative functionalities of the salmonid MAGs and reveal specific functions expected to benefit the host. Our data provide a basis for future studies examining the composition and function of the salmonid microbiota.
Publisher
Nature
Citation
Rasmussen JA, Villumsen, Duchêne, Puetz, Delmont, Sveier, von Gersdorff Jørgensen, Præbel, Martin, Bojesen, Gilbert MTP, Kristiansen, Limborg. Genome-resolved metagenomics suggests a mutualistic relationship between Mycoplasma and salmonid hosts. Communications Biology. 2021;4
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