The Global Soil Mycobiome consortium dataset for boosting fungal diversity research

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https://hdl.handle.net/10037/24229
DOI
https://doi.org/10.1007/s13225-021-00493-7
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Date
2021-11-30
Type
Journal article
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Peer reviewed

Author
Tedersoo, Leho; Mikryukov, Vladimir; Anslan, Sten; Bahram, Mohammad; Khalid, Abdul Nasir; Corrales, Adriana; Agan, Ahto; Vasco-Palacios, Aída-M.; Saitta, Alessandro; Antonelli, Alexandre; Rinaldi, Andrea C.; Verbeken, Annemieke; Sulistyo, Bobby P.; Tamgnoue, Boris; Furneaux, Brendan; Ritter, Camila Duarte; Nyamukondiwa, Casper; Sharp, Cathy; Marín, César; Dai, D.Q.; Gohar, Daniyal; Sharmah, Dipon; Biersma, Elisabeth M.; Cameron, Erin K.; De Crop, Eske; Otsing, Eveli; Davydov, Evgeny A.; Albornoz, Felipe E.; Brearley, Francis Q.; Buegger, Franz; Gates, Genevieve; Zahn, Geoffrey; Bonito, Gregory M.; Hiiesalu, Indrek; Hiiesalu, Inga; Zettur, Irma; Barrio, Isabel C.; Pärn, Jaan; Heilmann-Clausen, Jacob; Ankuda, Jelena; Kupagme, John Y.; Sarapuu, Joosep; Maciá-Vicente, Jose G.; Fovo, Joseph Djeugap; Geml, József; Alatalo, Juha M.; Alvarez-Manjarrez, Julieta; Monkai, Jutamart; Põldmaa, Kadri; Runnel, Kadri; Adamson, Kalev; Bråthen, Kari Anne; Pritsch, Karin; Tchan, Kassim I.; Armolaitis, Kęstutis; Hyde, Kevin D.; Newsham, Kevin K.; Panksep, Kristel; Adebola, Lateef A.; Lamit, Louis J.; Saba, Malka; da Silva Cáceres, Marcela E.; Tuomi, Maria; Gryzenhout, Marieka; Bauters, Marijn; Bálint, Miklós; Wijayawardene, Nalin N.; Hagh-Doust, Niloufar; Yorou, Nourou S.; Kurina, Olavi; Mortimer, Peter E.; Meidl, Peter; Nilsson, R. Henrik; Puusepp, Rasmus; Casique-Valdés, Rebeca; Drenkhan, Rein; Garibay-Orijel, Roberto; Godoy, Roberto; Alfarraj, Saleh; Rahimlou, Saleh; Põlme, Sergei; Dudov, Sergey V.; Mundra, Sunil; Ahmed, Talaat; Netherway, Tarquin; Henkel, Terry W.; Roslin, Tomas; Fedosov, Vladimir E.; Onipchenko, Vladimir G.; Yasanthika, W. A. Erandi; Lim, Young Woon; Piepenbring, Meike; Klavina, Darta; Kõljalg, Urmas; Abarenkov, Kessy
Abstract
Fungi are highly important biotic components of terrestrial ecosystems, but we still have a very limited understanding about their diversity and distribution. This data article releases a global soil fungal dataset of the Global Soil Mycobiome consortium (GSMc) to boost further research in fungal diversity, biogeography and macroecology. The dataset comprises 722,682 fungal operational taxonomic units (OTUs) derived from PacBio sequencing of full-length ITS and 18S-V9 variable regions from 3200 plots in 108 countries on all continents. The plots are supplied with geographical and edaphic metadata. The OTUs are taxonomically and functionally assigned to guilds and other functional groups. The entire dataset has been corrected by excluding chimeras, index-switch artefacts and potential contamination. The dataset is more inclusive in terms of geographical breadth and phylogenetic diversity of fungi than previously published data. The GSMc dataset is available over the PlutoF repository.
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This version of the article has been accepted for publication, after peer review and is subject to Springer Nature’s AM terms of use, but is not the Version of Record and does not reflect post-acceptance improvements, or any corrections. The Version of Record is available online at https://doi.org/10.1007/s13225-021-00493-7.
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Springer Nature
Citation
Tedersoo, Mikryukov, Anslan, Bahram, Khalid, Corrales, Agan, Vasco-Palacios, Saitta, Antonelli, Rinaldi, Verbeken, Sulistyo, Tamgnoue, Furneaux, Ritter, Nyamukondiwa, Sharp, Marín, Dai, Gohar, Sharmah, Biersma, Cameron, De Crop, Otsing, Davydov, Albornoz, Brearley, Buegger, Gates, Zahn, Bonito, Hiiesalu, Hiiesalu, Zettur, Barrio, Pärn, Heilmann-Clausen, Ankuda, Kupagme, Sarapuu, Maciá-Vicente, Fovo, Geml, Alatalo, Alvarez-Manjarrez, Monkai, Põldmaa, Runnel, Adamson, Bråthen, Pritsch, Tchan, Armolaitis, Hyde, Newsham, Panksep, Adebola, Lamit, Saba, da Silva Cáceres, Tuomi, Gryzenhout, Bauters, Bálint, Wijayawardene, Hagh-Doust, Yorou, Kurina, Mortimer, Meidl, Nilsson, Puusepp, Casique-Valdés, Drenkhan, Garibay-Orijel, Godoy, Alfarraj, Rahimlou, Põlme, Dudov, Mundra, Ahmed, Netherway, Henkel, Roslin, Fedosov, Onipchenko, Yasanthika, Lim, Piepenbring, Klavina, Kõljalg, Abarenkov. The Global Soil Mycobiome consortium dataset for boosting fungal diversity research. Fungal diversity. 2021;111(1):573-588
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