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dc.contributor.authorKaspersen, Håkon
dc.contributor.authorFiskebeck, Eve Marie Louise Zeyl
dc.date.accessioned2023-01-06T12:30:17Z
dc.date.available2023-01-06T12:30:17Z
dc.date.issued2022-11-29
dc.description.abstractA tooL for Prokaryotic Phylogeny And Clustering Analysis (ALPPACA) is a pipeline that allows both de-novo and reference-based phylogenetic analysis of prokaryotic genomes. The pipeline provides a suite of analyses tailored for different scenarios, designed to allow analysis of datasets represented by three different genetic diversity levels, all in one package. These levels of similarity influence what assumptions are used to consider sequences as orthologous when reconstructing the multiple alignment required for phylogenetic inference. By selecting an appropriate track for the data at hand, the user can be confident that these assumptions are taken care of within the framework of ALPPACA.en_US
dc.identifier.citationKaspersen H, Fiskebeck EML. ALPPACA - A tooL for Prokaryotic Phylogeny And Clustering Analysis. Journal of Open Source Software (JOSS). 2022en_US
dc.identifier.cristinIDFRIDAID 2101508
dc.identifier.doihttps://doi.org/10.21105/joss.04677
dc.identifier.issn2475-9066
dc.identifier.urihttps://hdl.handle.net/10037/28055
dc.language.isoengen_US
dc.publisherOpen Journalsen_US
dc.relation.journalJournal of Open Source Software (JOSS)
dc.rights.accessRightsopenAccessen_US
dc.rights.holderCopyright 2022 The Author(s)en_US
dc.rights.urihttps://creativecommons.org/licenses/by/4.0en_US
dc.rightsAttribution 4.0 International (CC BY 4.0)en_US
dc.titleALPPACA - A tooL for Prokaryotic Phylogeny And Clustering Analysisen_US
dc.type.versionpublishedVersionen_US
dc.typeJournal articleen_US
dc.typeTidsskriftartikkelen_US
dc.typePeer revieweden_US


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Attribution 4.0 International (CC BY 4.0)
Except where otherwise noted, this item's license is described as Attribution 4.0 International (CC BY 4.0)