dc.contributor.author | Holm, Kåre Olav | |
dc.contributor.author | Bækkedal, Cecilie | |
dc.contributor.author | Johansson Söderberg, Jenny | |
dc.contributor.author | Haugen, Peik | |
dc.date.accessioned | 2018-07-09T07:29:42Z | |
dc.date.available | 2018-07-09T07:29:42Z | |
dc.date.issued | 2018-04-07 | |
dc.description.abstract | We report here the complete genome sequences of seven Vibrio anguillarum strains isolated from multiple geographic locations, thus increasing the total number of genomes of finished quality to 11. The genomes were de novo assembled from long-sequence PacBio reads. Including draft genomes, a total of 44 V. anguillarum genomes are currently available in the genome databases. They represent an important resource in the study of, for example, genetic variations and for identifying virulence determinants. In this article, we present the genomes and basic genome comparisons of the 11 complete genomes, including a BRIG analysis, and pan genome calculation. We also describe some structural features of superintegrons on chromosome 2 s, and associated insertion sequence (IS) elements, including 18 new ISs (ISVa3 − ISVa20), both of importance in the complement of V. anguillarum genomes. | en_US |
dc.description.sponsorship | UiT - The Arctic University of Norway | en_US |
dc.description | <a href=https://oup.silverchair-cdn.com/oup/backfile/Content_public/Journal/gbe/10/4/10.1093_gbe_evy074/1/evy074_supp.zip?Expires=2147483647&Signature=v6qPapSb9R8DGdxy~QVGjZlF2nymA3jm4g~Q9jqzPbCQtq-RrY3iNzyA1jJVsfa6jd3r-EpkKIOHhdsWyfppJqgHI3Utiwo0W8KMDAEBeC-k7SARnu0kFUcnhPI41oNbhGV7DdaUhMuCXWeKe8oeLmn4LsTa1i6AwskJEnY8xQ3zvzexgNGKdXcvXD5LwxukQZ69ptnSGDCCO9Gu4xzu9SqhPpidWDvl9ZtKO8uV3F9oyzEhHhZccTiy9QtZJc3gKAm98IRkPzbUCvB6exE3Yjf9KWJx8xaPQqiz7Ou2vJBFIF5N-DnldDOYXqjwO8hJA8IQJ-INwwhG7JE0-h9SVw__&Key-Pair-Id=APKAIE5G5CRDK6RD3PGA>Supplementary data</a> available. | en_US |
dc.identifier.citation | Holm, K.O., Bækkedal, C., Johansson Söderberg, J. & Haugen, P. (2018). Complete Genome Sequences of Seven Vibrio anguillarum Strains as Derived from PacBio Sequencing. Genome Biology and Evolution, 10(4), 1127-1131. https://doi.org/10.1093/gbe/evy074. | en_US |
dc.identifier.cristinID | FRIDAID 1591994 | |
dc.identifier.doi | 10.1093/gbe/evy074 | |
dc.identifier.issn | 1759-6653 | |
dc.identifier.uri | https://hdl.handle.net/10037/13182 | |
dc.language.iso | eng | en_US |
dc.publisher | Oxford University Press (OUP) | en_US |
dc.relation.ispartof | Sonnenberg, C.B. (2023). Exploring multipartite genomes using pangenome analysis. (Doctoral thesis). <a href=https://hdl.handle.net/10037/29372>https://hdl.handle.net/10037/29372</a>. | |
dc.relation.journal | Genome Biology and Evolution | |
dc.relation | <a href=https://oup.silverchair-cdn.com/oup/backfile/Content_public/Journal/gbe/10/4/10.1093_gbe_evy074/1/evy074_supp.zip?Expires=2147483647&Signature=v6qPapSb9R8DGdxy~QVGjZlF2nymA3jm4g~Q9jqzPbCQtq-RrY3iNzyA1jJVsfa6jd3r-EpkKIOHhdsWyfppJqgHI3Utiwo0W8KMDAEBeC-k7SARnu0kFUcnhPI41oNbhGV7DdaUhMuCXWeKe8oeLmn4LsTa1i6AwskJEnY8xQ3zvzexgNGKdXcvXD5LwxukQZ69ptnSGDCCO9Gu4xzu9SqhPpidWDvl9ZtKO8uV3F9oyzEhHhZccTiy9QtZJc3gKAm98IRkPzbUCvB6exE3Yjf9KWJx8xaPQqiz7Ou2vJBFIF5N-DnldDOYXqjwO8hJA8IQJ-INwwhG7JE0-h9SVw__&Key-Pair-Id=APKAIE5G5CRDK6RD3PGA>Supplementary material</a> | en |
dc.rights.accessRights | openAccess | en_US |
dc.subject | Vibrio anguillarum | en_US |
dc.subject | chromosomal integrons | en_US |
dc.subject | integrases | en_US |
dc.subject | insertion sequences | en_US |
dc.subject | IS-elements | en_US |
dc.subject | PacBio sequencing | en_US |
dc.subject | VDP::Matematikk og Naturvitenskap: 400::Basale biofag: 470::Bioinformatikk: 475 | en_US |
dc.subject | VDP::Mathematics and natural science: 400::Basic biosciences: 470::Bioinformatics: 475 | en_US |
dc.title | Complete Genome Sequences of Seven Vibrio anguillarum Strains as Derived from PacBio Sequencing | en_US |
dc.type | Journal article | en_US |
dc.type | Tidsskriftartikkel | en_US |
dc.type | Peer reviewed | en_US |