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dc.contributor.advisorWillassen, Nils Peder
dc.contributor.authorKhider, Miriam
dc.date.accessioned2019-11-06T07:49:03Z
dc.date.available2019-11-06T07:49:03Z
dc.date.issued2019-10-22
dc.description.abstract<p>The marine pathogen <i>Aliivibrio salmonicida</i> is the causative agent of cold-water vibriosis, affecting mainly farmed salmonid fish when water temperatures are below 10°C. Even though cold-water vibriosis is no longer threatening Norwegian aquaculture, the reemergence of the disease is still a possibility. Therefore, it is crucial to gain knowledge and understanding of the pathogenicity of <i>A. salmonicida</i>. Quorum sensing (QS) is one of the communication systems used by bacteria to regulate gene expression in a synchronized way in response to cell density by secreting and sensing extracellular signals called autoinducers (AIs). QS system controls various physiological processes, particularly virulence system and biofilm formation in many pathogenic bacteria. With the increased emergence of antibiotic-resistant in recent years, understanding and targeting QS system is expected to bring potential new breakthroughs for the prevention and treatment of <i>Vibrio</i> infections. The present work was initiated to increase the knowledge on the QS system and its regulation on phenotypic traits that may be important for survival and host-pathogen interaction in <i>A. salmonicida</i>. <p>Alternative sigma factors such as RpoS provide the main line of responses to changes in the environment by altering gene transcription. In several vibrios, RpoS has been shown to be connected to QS system. The obtained results in this thesis, clearly indicate that an RpoS-like sigma factor, RpoQ (<i>VSAL_II0319</i>) is a component of the QS system and involved in regulating colony rugosity, biofilm formation, and motility in a cell density dependent manner. The transcriptomics analysis further revealed that RpoQ is involved in influencing expression of a large panel of genes including the syp operon involved in polysaccharide production. This suggests that the downregulation of biofilm development and wrinkled colony phenotype were due to RpoQ-dependent repression on polysaccharide biosynthesis genes (<i>syp</i> genes) at high cell density. In addition to cell density dependent control on biofilm formation and colony rugosity through QS, temperature was shown to influence the regulation of RpoQ on these phenotypes, linking this environmental factor to the development of cold-water vibriosis in seawater at low temperatures. <p>Previous reports have shown that <i>A. salmonicida</i> possesses two functional autoinducer synthases, the LuxI and AinS, which are responsible for the production of eight acyl homoserine lactones (AHLs). In this thesis, the inactivation of <i>luxI</i>, but not <i>ainS</i>, led to the formation of wrinkled colonies similar to those formed by the <i>ΔrpoQ</i> mutant. The transcriptome analysis showed that LuxI is required for repression of syp expression, where repression of syp is likely operated through the RpoQ sigma factor. When both systems were inactivated simultaneously, strains (<i>ΔainSluxI<sup>−</sup></i>) with wrinkled colonies and mushroom structured biofilm were formed. Furthermore, the exogenous addition of either LuxI, N-3-oxo-hexanoyl-L-homoserine lactone (3OC6-HSL) or AinS, N-3-hydroxy-decanoyl-L-homoserine lactone (3OHC10-HSL), to the <i>ΔainSluxI<sup>-</sup></i> double mutant, inhibited biofilm development. This suggested that the downregulation of biofilm formation is operated through a common pathway when the AHL concentrations are high. <p>The results presented in this work, add new knowledge about the nature of the QS mechanism of A. salmonicida and elucidate some aspects of the complex mechanism of biofilm formation, contributing to advancement of research in this field.en_US
dc.description.doctoraltypeph.d.en_US
dc.description.popularabstractBacteria that belong to the <i>Vibrionaceae</i> family can cause diseases in both humans and animals. <i>Aliivibrio salmonicida</i> belongs to the <i>Vibrionaceae</i> family and is the causative agent of cold-water vibriosis, affecting Atlantic salmon (<i>Salmo salar</i>), rainbow trout (<i>Oncorhynchus mykiss</i>) and captive Atlantic cod (<i>Gadus morhua</i>). The disease occurs mainly at late autumn, winter and early spring when seawater temperatures are below 10&deg;C. The early stages of the cold-water vibriosis lead to lethargy, swimming disturbances and cessation of feeding. Affected fish turn dark and exophthalmos may be seen. The cold-water vibriosis is also known as “Hitra disease” as it appeared for the first time in 1979 at Norwegian salmon farms close to Hitra island, south of Trondheim-Norway. Since then the disease was controlled by vaccination, but reappeared in 2011 at Atlantic salmon farms despite vaccination. Even though cold-water vibriosis is no longer a hazard toward the fish industry in Norway, the reemergence of the disease is still a possibility. Therefore, it is crucial to gain knowledge and understanding of the pathogenicity of <i>A. salmonicida</i>. Quorum sensing (QS) is one of the communication systems used by bacteria to regulate gene expression in a synchronized way in response to cell density by secreting and sensing extracellular signals called autoinducers (AIs). N-acyl-homoserine lactones (AHLs) are a class of signal molecules used by Gram-negative bacteria including <i>A. salmonicida</i>. QS in <i>A. salmonicida</i> was studied and reveled two functional QS systems that are able to produce eight signaling AHLs through AinS and LuxI autoinducers. The AinS autoinducer synthase synthesizes only one AHL, and LuxI autoinducer synthase synthesizes seven AHLs. QS system controls various physiological processes, particularly virulence system and biofilm formation in many pathogenic bacteria. Understanding and targeting QS system is expected to bring potential new breakthroughs for the prevention and treatment of <i>Vibrio</i> infections. The goal of the present work was initiated to increase the knowledge on the QS system and its regulation on phenotypic traits that may be important for survival and host-pathogen interaction in <i>A. salmonicida</i>. <p>LitR, the master regulator of QS in <i>A. salmonicida</i>, has been shown to regulate a number of activities such as biofilm formation, colony morphology, motility, AHL production, adhesiveness and virulence. LitR was also found to regulate the RpoS-like alternative sigma factor, RpoQ. Alternative sigma factors provide the main line of responses to changes in the environment by altering gene transcription. In several vibrios, RpoS has been shown to be connect to QS system. These studies led us to suspect that RpoQ may be involved in regulating some of the phenotypes related to QS in <i>A. salmonicida</i> LFI1238. In the context of QS, the role of RpoQ sigma factor was characterized in this thesis to gain insight into the regulation of biofilm formation, colony rugosity and motility. For this purpose, an in-frame deletion mutant of the <i>rpoQ</i> coding sequence (<i>&#8710;rpoQ</i> mutant) was constructed and compared to the wild type. The inactivation of <i>rpoQ</i> led to a strong colony morphology, biofilm formation and showed reduced motility as compared to wild type. Our results clearly indicate that RpoS-like sigma factor, RpoQ is a component of QS system and involved in regulating QS-related traits in a cell density dependent manner. To further support the results obtained from the knock-out experiments, a global transcriptome profiling analysis was performed. Samples from A. salmonicida mutants were collected from three independent cultures and the RNA sequencing was done using the TruSeq standard mRNA library prep kit from Illumina, and sequenced using the Illumina NextSeq 500 platform at the Norwegian High Throughput Sequencing Centre - Oslo University Hospital. The transcriptomics analysis of <i>&#8710;rpoQ</i> mutant further revealed that RpoQ is involved in influencing expression of a large panel of genes including a number of flagellar biosynthesis genes and the <i>syp</i> operon involved in polysaccharide production. This suggests that downregulation of biofilm development and wrinkled colony phenotype were due to RpoQ-dependent repression on polysaccharide biosynthetic genes (<i>syp</i> genes) at high cell density. In addition to cell density dependent control on biofilm formation and colony rugosity through QS, temperature was shown to influence the regulation of RpoQ on these phenotypes, linking this environmental factor to the development of cold-water vibriosis in seawater at low temperatures. <p>Previous reports have shown that the inactivation of <i>ain</i> and <i>lux</i> autoinducer synthases in <i>A. salmonicida</i>, resulted in no AHL production and in formation of a well-structured, three-dimensional biofilm architecture, which we refer to as “mature biofilm”. The fact that biofilm formation in <i>A. salmonicida</i> is regulated by QS at high cell density, led to the speculation that AHLs play a critical role in the downregulation of biofilm formation when cell density rises. In this thesis, the exogenous addition of either LuxI, N-3-oxo-hexanoyl-L-homoserine lactone (3OC6-HSL) or AinS, N-3-hydroxy-decanoyl-L-homoserine lactone (3OHC10-HSL), inhibited biofilm development. This suggested that downregulation of biofilm formation is operated through a common pathway, when the AHL concentrations are high. Furthermore, the inactivation of <i>ainS</i> autoinducer alone did not result in neither biofilm formation nor colony rugosity, nevertheless, the introduction of <i>luxI</i> mutation to a <i>&#8710;ainS</i> background, resulted in a double mutant strain (<i>&#8710;ainSluxI<sup>-</sup></i>) with three-dimensional biofilm architecture and wrinkled colony morphology. Hence, when both systems <i>luxI</i> and <i>ainS</i> were inactivated simultaneously wrinkled colonies and a mature biofilm were formed. These results confirm that both LuxI and AinS regulate biofilm formation synergistically through a common pathway. The inactivation of <i>luxI</i> autoinducer alone, led to the formation of wrinkled colonies similar to those formed by the <i>&#8710;rpoQ</i> mutant. The transcriptome analysis of the <i>luxI<sup>-</sup></i< mutant showed that LuxI is also required for repression of <i>syp</i> expression, where repression of <i>syp</i> is likely operated through the RpoQ sigma factor. <p>The results presented in this work, add new knowledge about the nature of the QS mechanism of <i>A. salmonicida</i> and elucidate some aspects of the complex mechanism of biofilm formation, contributing to advancement of research in this field.en_US
dc.description.sponsorshipThe Arctic University of Norway-UiT BioStruct Ph.D. School The Research Council of Norwayen_US
dc.identifier.isbn978-82-8236-361-7
dc.identifier.urihttps://hdl.handle.net/10037/16612
dc.language.isoengen_US
dc.publisherUiT Norges arktiske universiteten_US
dc.publisherUiT The Arctic University of Norwayen_US
dc.relation.haspart<p>Paper I: Khider, M., Willassen, N.P. & Hansen, H. (2018). The alternative sigma factor RpoQ regulates colony morphology, biofilm formation and motility in the fish pathogen <i>Aliivibrio salmonicida</i>. <i>BMC Microbiology, 18</i>, 116. Also available in Munin at <a href=https://hdl.handle.net/10037/15091>https://hdl.handle.net/10037/15091</a>. <p>Paper II: Khider, M., Hjerde, E., Hansen, H. & Willassen, N.P. (2019). Differential expression profiling of ΔlitR and ΔrpoQ mutants reveals insight into QS regulation of motility, adhesion and biofilm formation in <i>Aliivibrio salmonicida</i>. <i>BMC Genomics, 20</i>, 220. Also available in Munin at <a href=https://hdl.handle.net/10037/15095>https://hdl.handle.net/10037/15095</a>. <p>Paper III: Khider, M., Hansen, H., Hjerde, E, Johansen, J.A. & Willassen, N.P. (2018). Exploring the transcriptome of luxI- and ΔainS mutants and the impact of N-3-oxo-hexanoyl-L- and N-3-hydroxy- decanoyl-L-homoserine lactones on biofilm formation in <i>Aliivibrio salmonicida</i>. <i>PeerJ, 7</i>, e6845. Also available in Munin at <a href=https://hdl.handle.net/10037/15310>https://hdl.handle.net/10037/15310</a>.en_US
dc.rights.accessRightsopenAccessen_US
dc.rights.holderCopyright 2019 The Author(s)
dc.subject.courseIDDOKTOR-004
dc.subjectVDP::Mathematics and natural science: 400::Basic biosciences: 470::Molecular biology: 473en_US
dc.subjectVDP::Matematikk og Naturvitenskap: 400::Basale biofag: 470::Molekylærbiologi: 473en_US
dc.subjectVDP::Mathematics and natural science: 400::Basic biosciences: 470::General microbiology: 472en_US
dc.subjectVDP::Matematikk og Naturvitenskap: 400::Basale biofag: 470::Generell mikrobiologi: 472en_US
dc.subjectVDP::Mathematics and natural science: 400::Basic biosciences: 470::Genetics and genomics: 474en_US
dc.subjectVDP::Matematikk og Naturvitenskap: 400::Basale biofag: 470::Genetikk og genomikk: 474en_US
dc.subjectVDP::Mathematics and natural science: 400::Basic biosciences: 470::Bioinformatics: 475en_US
dc.subjectVDP::Matematikk og Naturvitenskap: 400::Basale biofag: 470::Bioinformatikk: 475en_US
dc.titleExploring Quorum Sensing Dynamics and Biofilm Formation in the Fish Pathogen Aliivibrio salmonicidaen_US
dc.typeDoctoral thesisen_US
dc.typeDoktorgradsavhandlingen_US


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