dc.contributor.advisor | Willassen, Nils Peder | |
dc.contributor.author | Purohit, Amit | |
dc.date.accessioned | 2013-07-04T10:49:48Z | |
dc.date.available | 2013-07-04T10:49:48Z | |
dc.date.issued | 2013-06-13 | |
dc.description.abstract | Bacterial cell to cell communication, which involves regulation of gene expression in response to cell density, is defined as Quorum Sensing (QS). In QS small molecule signals are produced, which regulate their own production and are defined as auto-inducers. These signals are received by receiver proteins and in response certain genes are regulated directly or indirectly by these receiver proteins. Acyl-homoserine lactones (Acyl-HSLs or AHLs) are one of such signaling molecules produced mainly by Gram negative bacteria. We modified an existing liquid chromatography and mass spectrometry method for the detection of AHLs and detected 15 different AHLs, differing in number of carbons of the acyl chain and the third position functional group. In total, 57 different Vibrionaceae family members were screened for AHL production, comprising of Aliivibrio, Photobacterium and Vibrio strains. Many bacteria produced multiple AHLs and when mapped on a phylogenetic tree generated on the 16 rRNA gene sequences of the bacteria, it revealed an evolutionary relationship between similar bacteria and AHLs produced by them. This method was used to analyze the QS system of a Salmon fish pathogen Aliivibrio salmonicida LFI1238 where many mutants of genes involved in QS were created in the bacteria to study the influence they have on AHL production. Two synthases were identified (LuxI and AinS) and it was found that LuxI was responsible for making seven AHLs and AinS produced only one. It was also revealed that the A salmonicida has a cold adapted QS system as the signal production decreased from 6°C to 16°C. Further, an AHL synthase VanM from another fish pathogen Vibrio anguillarum NB10 was recombinantl expressed and purified and its substrate specificity was analyzed by studying the rate kinetics of different substrates. It was observed that the enzyme VanM has a C6 acyl chain length preference along with a hydroxyl group substitution at the third position. | en |
dc.description.doctoraltype | ph.d. | en |
dc.description.popularabstract | Bakterier kommuniserer med andre celler gjennom I en prosess kalt Quorum sensing (QS) som involverer regulering av genuttrykk i respons til celletetthet. Bakteriene kommuniserer ved hjelp av små organiske signalmolekyler ofte kalt auto-indusere. Disse signalmolekylene blir mottatt av reseptorer proteiner og i respons blir visse gener regulert enten direkte eller indirekte. Acyl-homoserin laktoner (AHL) er en type av slike signalmolekyler som produseres hovedsakelig av Gram negative bakterier.
Vi videreutviklet en væskekromatografi og massespektroskopi metode for påvisning av forskjellige typer AHL. Denne metoden ble benyttet til undersøke 57 ulike bakterier i Vibrionaceae familien. Mange av disse bakteriene produsert flere ulike typer AHL og kunne påvise en evolusjonær sammenheng mellom nært beslektede bakterier og hvilke AHL som ble produsert.
Metoden ble brukt til å analysere QS systemet i bakterien Aliivibrio salmonicida LFI1238 hvor mutanter av gener involvert i QS ble konstruert å studere innflytelsen de har på AHL produksjon. To enzymer som er ansvarlig for produksjon av AHL ble identifisert (LuxI og AinS) og en kunne vise at LuxI var ansvarlig for å produksjon av syv AHLs og AinS produsert bare én. Det ble også vist at A. salmonicida har QS systemet hvor produksjonen av signalene er temperaturavhengig. VanM, et AHL produserende enzym, fra bakterien Vibrio anguillarum NB10, ble videre uttrykt, renset og karakterisert. Enzymet viser en preferanse for substrater med en acylkjede lengde på 6 karbonatomer og en hydroksylgruppe i tredje posisjonen i kjeden. | en |
dc.description.sponsorship | University of Tromsø | en |
dc.description | The papers of this thesis are not available in Munin: <br/>1. Amit Anand Purohit, Jostein A Johansen, Hilde Hansen, Hanna Kirsti Leiros, Alexander Kashulin, Christian Karlsen, Arne Smalås, Peik Haugen and Nils Peder Willassen: 'Presence of acyl-homoserine lactones in 57 members of the Vibrionaceae family' (manuscript) <br/>2. Amit Anand Purohit, Hilde Hansen, Ane Mohn Bjelland, Stefanie Kellermann, Hanna Kirsti
Schroder Leiros, Jostein A Johansen and Nils Peder Willassen: 'Temperature dependent regulation of quorum sensing in Aliivibrio salmonicida LFI1238' (manuscript) <br/>3. Amit Anand Purohit, Hanna-Kirsti S. Leiros, Hilde Hansen, Jostein A Johansen, Peik Haugen,
Annette Bayer, Magnus Engqvist, Arne Smalås and Nils Peder Willassen: 'Preliminary analysis
of the substrate specificity of acyl homoserine lactone (AHL) synthase VanM from Vibrio anguillarum' (manuscript) | en |
dc.identifier.isbn | 978-82-8236-094-4 | |
dc.identifier.isbn | 978-82-8236-095-1 | |
dc.identifier.uri | https://hdl.handle.net/10037/5244 | |
dc.identifier.urn | URN:NBN:no-uit_munin_4957 | |
dc.language.iso | eng | en |
dc.publisher | Universitetet i Tromsø | en |
dc.publisher | University of Tromsø | en |
dc.rights.accessRights | openAccess | |
dc.rights.holder | Copyright 2013 The Author(s) | |
dc.rights.uri | https://creativecommons.org/licenses/by-nc-sa/3.0 | en_US |
dc.rights | Attribution-NonCommercial-ShareAlike 3.0 Unported (CC BY-NC-SA 3.0) | en_US |
dc.subject | VDP::Mathematics and natural science: 400::Basic biosciences: 470::General microbiology: 472 | en |
dc.subject | VDP::Matematikk og Naturvitenskap: 400::Basale biofag: 470::Generell mikrobiologi: 472 | en |
dc.subject | VDP::Mathematics and natural science: 400::Chemistry: 440::Analytical chemistry: 445 | en |
dc.subject | VDP::Matematikk og Naturvitenskap: 400::Kjemi: 440::Analytisk kjemi: 445 | en |
dc.subject | VDP::Mathematics and natural science: 400::Basic biosciences: 470::Molecular biology: 473 | en |
dc.subject | VDP::Matematikk og Naturvitenskap: 400::Basale biofag: 470::Molekylærbiologi: 473 | en |
dc.subject | VDP::Mathematics and natural science: 400::Basic biosciences: 470 | en |
dc.subject | VDP::Matematikk og Naturvitenskap: 400::Basale biofag: 470 | en |
dc.title | Acyl homoserine lactone signaling in members of the Vibrionaceae family | en |
dc.type | Doctoral thesis | en |
dc.type | Doktorgradsavhandling | en |