Blar i forfatter Norges arktiske universitetsmuseum "Hackenberg, Michael"

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    • MirGeneDB 2.1: toward a complete sampling of all major animal phyla 

      Fromm, Bastian; Høye, Eirik; Domanska, Diana; Zhong, Xiangfu; Aparicio-Puerta, Ernesto; Ovchinnikov, Vladimir; Umu, Sinan Ugur; Chabot, Peter J; Kang, Wenjing; Aslanzadeh, Morteza; Marmol-Sanchez, Emilio; Urgese, Gianvito; Johansen, Morten; Hovig, Eivind; Hackenberg, Michael; Friedländer, Marc R.; Peterson, Kevin (Journal article; Tidsskriftartikkel; Peer reviewed, 2021-11-25)
      We describe an update of MirGeneDB, the manually curated microRNA gene database. Adhering to uniform and consistent criteria for microRNA annotation and nomenclature, we substantially expanded MirGeneDB with 30 additional species representing previously missing metazoan phyla such as sponges, jellyfish, rotifers and flatworms. MirGeneDB 2.1 now consists of 75 species spanning over ∼800 million ...

    • sRNAbench and sRNAtoolbox 2022 update: accurate miRNA and sncRNA profiling for model and non-model organisms 

      Aparicio-Puerta, Ernesto; Gómez-Martín, Cristina; Giannoukakos, Stavros; Medina, José María; Scheepbouwer, Chantal; García-Moreno, Adrián; Carmona-Saez, Pedro; Fromm, Bastian; Pegtel, Michiel; Keller, Andreas; Marchal, Juan Antonio; Hackenberg, Michael (Journal article; Tidsskriftartikkel; Peer reviewed, 2022-05-12)
      The NCBI Sequence Read Archive currently hosts microRNA sequencing data for over 800 different species, evidencing the existence of a broad taxonomic distribution in the field of small RNA research. Simultaneously, the number of samples per miRNA-seq study continues to increase resulting in a vast amount of data that requires accurate, fast and user-friendly analysis methods. Since the previous ...