• ML-Peaks: Chip-seq peak detection pipeline using machine learning techniques 

      Sheshkal, Sajad Amouei; Riegler, Michael; Hammer, Hugo Lewi (Chapter; Bokkapittel, 2023-07-17)
      CHIP-Seq data is critical for identifying the locations where proteins bind to DNA, offering valuable insights into disease molecular mechanisms and potential therapeutic targets. However, identifying regions of protein binding, or peaks, in CHIP-seq data can be challenging due to limitations in peak detection methods. Current computational tools often require manual human inspection using data ...
    • MSRF-Net: A Multi-Scale Residual Fusion Network for Biomedical Image Segmentation 

      Srivastava, Abhishek; Jha, Debesh; Chanda, Sukalpa; Pal, Umapada; Johansen, Håvard D.; Johansen, Dag; Riegler, Michael; Ali, Sharib; Halvorsen, Pål (Journal article; Tidsskriftartikkel; Peer reviewed, 2021-12-23)
      Methods based on convolutional neural networks have improved the performance of biomedical image segmentation. However, most of these methods cannot efficiently segment objects of variable sizes and train on small and biased datasets, which are common for biomedical use cases. While methods exist that incorporate multi-scale fusion approaches to address the challenges arising with variable ...
    • Performance of data enhancements and training optimization for neural network: A polyp detection case study 

      Henriksen, Fredrik Lund; Jensen, Rune; Stensland, Håkon Kvale; Johansen, Dag; Riegler, Michael; Halvorsen, Pål (Journal article; Tidsskriftartikkel; Peer reviewed, 2019-08-05)
      Deep learning using neural networks is becoming more and more popular. It is frequently used in areas like video analysis, image retrieval, traffic forecast and speech recognition. In this respect, the learning and training process usually requires a lot of data. However, in many areas, data is scarce which is definitely the case in our medical application scenario, i.e., polyp detection in the ...
    • Predicting an unstable tear film through artificial intelligence 

      Fineide, Fredrik; Chen, Xiangjun; Magnø, Morten Schjerven; Yazidi, Anis; Riegler, Michael; Utheim, Tor Paaske; Storås, Andrea Marheim (Journal article; Tidsskriftartikkel; Peer reviewed, 2022-12-10)
      Dry eye disease is one of the most common ophthalmological complaints and is defined by a loss of tear film homeostasis. Establishing a diagnosis can be time-consuming, resource demanding and unpleasant for the patient. In this pilot study, we retrospectively included clinical data from 431 patients with dry eye disease examined in the Norwegian Dry Eye Clinic to evaluate how artificial intelligence ...
    • Predicting peek readiness-to-train of soccer players using long short-term memory recurrent neural networks 

      Wiik, Theodor; Johansen, Håvard D.; Pettersen, Svein Arne; Matias Do Vale Baptista, Ivan Andre; Kupka, Tomas; Johansen, Dag; Riegler, Michael; Halvorsen, Pål (Conference object; Konferansebidrag, 2019-10-21)
      We are witnessing the emergence of a myriad of hardware and software systems that quantifies sport and physical activities. These are frequently touted as game changers and important for future sport developments. The vast amount of generated data is often visualized in graphs and dashboards, for use by coaches and other sports professionals to make decisions on training and match strategies. Modern ...
    • Prediction of schizophrenia from activity data using hidden Markov model parameters 

      Boeker, Matthias; Hammer, Hugo Lewi; Riegler, Michael; Halvorsen, Pål; Jakobsen, Petter (Journal article; Tidsskriftartikkel; Peer reviewed, 2022-09-27)
      In this paper, we address the problem of predicting schizophrenia based on a persons measured motor activity over time. A key challenge to achieve this is how to extract features from the activity data that can efficiently separate schizophrenia patients from healthy subjects. To achieve this, we suggest to fit time dependent hidden Markov models with and without integrated covariates and letting ...
    • Real-Time Polyp Detection, Localization and Segmentation in Colonoscopy Using Deep Learning 

      Jha, Debesh; Ali, Sharib; Tomar, Nikhil Kumar; Johansen, Håvard D.; Johansen, Dag; Rittscher, Jens; Riegler, Michael; Halvorsen, Pål (Journal article; Tidsskriftartikkel; Peer reviewed, 2021-03-04)
      Computer-aided detection, localization, and segmentation methods can help improve colonoscopy procedures. Even though many methods have been built to tackle automatic detection and segmentation of polyps, benchmarking of state-of-the-art methods still remains an open problem. This is due to the increasing number of researched computer vision methods that can be applied to polyp datasets. ...
    • Sleep Monitoring with Wearable Sensor Data in an eCoach Recommendation System: A Conceptual Study with Machine Learning Approach 

      Chatterjee, Ayan; Prinz, Andreas; Pahari, Nibedita; Das, Jishnu; Riegler, Michael (Chapter; Bokkapittel, 2023-04-25)
      The collective effects of sleep loss and sleep disorders are correlated with many adverse health consequences, including increased risk of high blood pressure, obesity, diabetes, depressive state, and cardiovascular symptoms. Research in eHealth can provide methods to enrich personal health care with information and communication technologies (ICTs). An eCoach system may allow people to manage a ...
    • Synthesizing a Talking Child Avatar to Train Interviewers Working with Maltreated Children 

      Salehi, Pegah; Hassan, Syed Zohaib; Lammerse, Myrthe; Shafiee Sabet, Saeed; Riiser, Ingvild; Røed, Ragnhild Klingenberg; Sinkerud Johnson, Miriam; Hicks, Steven; Thambawita, Vajira; Powell, Martine; Lamb, Michael E.; Baugerud, Gunn Astrid; Halvorsen, Pål; Riegler, Michael (Journal article; Tidsskriftartikkel; Peer reviewed, 2022-06-01)
      When responding to allegations of child sexual, physical, and psychological abuse, Child Protection Service (CPS) workers and police personnel need to elicit detailed and accurate accounts of the abuse to assist in decision-making and prosecution. Current research emphasizes the importance of the interviewer’s ability to follow empirically based guidelines. In doing so, it is essential to implement ...
    • Towards the Neuroevolution of Low-level artificial general intelligence 

      Pontes Filho, Sidney; Olsen, Kristoffer; Yazidi, Anis; Riegler, Michael; Halvorsen, Pål; Nichele, Stefano (Journal article; Tidsskriftartikkel; Peer reviewed, 2022-10-14)
      In this work, we argue that the search for Artificial General Intelligence should start from a much lower level than human-level intelligence. The circumstances of intelligent behavior in nature resulted from an organism interacting with its surrounding environment, which could change over time and exert pressure on the organism to allow for learning of new behaviors or environment models. Our ...
    • Unraveling the Impact of Land Cover Changes on Climate Using Machine Learning and Explainable Artificial Intelligence 

      Kolevatova, Anastasiia; Riegler, Michael; Cherubini, Francesco; Hu, Xiangping; Hammer, Hugo Lewi (Journal article; Tidsskriftartikkel; Peer reviewed, 2021-10-15)
      A general issue in climate science is the handling of big data and running complex and computationally heavy simulations. In this paper, we explore the potential of using machine learning (ML) to spare computational time and optimize data usage. The paper analyzes the effects of changes in land cover (LC), such as deforestation or urbanization, on local climate. Along with green house gas emission, ...
    • Usefulness of Heat Map Explanations for Deep-Learning-Based Electrocardiogram Analysis 

      Storås, Andrea; Andersen, Ole Emil; Lockhart, Sam; Thielemann, Roman; Gnesin, Filip; Thambawita, Vajira L B; Hicks, Steven; Kanters, Jørgen K.; Strumke, Inga; Halvorsen, Pål; Riegler, Michael (Journal article; Tidsskriftartikkel; Peer reviewed, 2023-07-11)
      Deep neural networks are complex machine learning models that have shown promising results in analyzing high-dimensional data such as those collected from medical examinations. Such models have the potential to provide fast and accurate medical diagnoses. However, the high complexity makes deep neural networks and their predictions difficult to understand. Providing model explanations can be a way ...