dc.contributor.author | Acuña Maldonado, Sebastian Andres | |
dc.contributor.author | Opstad, Ida Sundvor | |
dc.contributor.author | Godtliebsen, Fred | |
dc.contributor.author | Ahluwalia, Balpreet Singh | |
dc.contributor.author | Agarwal, Krishna | |
dc.date.accessioned | 2021-01-23T10:17:43Z | |
dc.date.available | 2021-01-23T10:17:43Z | |
dc.date.issued | 2020-10-28 | |
dc.description.abstract | Multiple signal classification algorithm (MUSICAL) exploits temporal fluctuations in fluorescence intensity to perform super-resolution microscopy by computing the value of a super-resolving indicator function across a fine sample grid. A key step in the algorithm is the separation of the measurements into signal and noise subspaces, based on a single user-specified parameter called the threshold. The resulting image is strongly sensitive to this parameter and the subjectivity arising from multiple practical factors makes it difficult to determine the right rule of selection. We address this issue by proposing soft thresholding schemes derived from a new generalized framework for indicator function design. We show that the new schemes significantly alleviate the subjectivity and sensitivity of hard thresholding while retaining the super-resolution ability. We also evaluate the trade-off between resolution and contrast and the out-of-focus light rejection using the various indicator functions. Through this, we create significant new insights into the use and further optimization of MUSICAL for a wide range of practical scenarios. | en_US |
dc.identifier.citation | Acuña Maldonado SAA, Opstad IS, Godtliebsen F, Ahluwalia BS, Agarwal K. Soft thresholding schemes for multiple signal classification algorithm. Optics Express. 2020;28(23) | en_US |
dc.identifier.cristinID | FRIDAID 1843230 | |
dc.identifier.doi | 10.1364/OE.409363 | |
dc.identifier.issn | 1094-4087 | |
dc.identifier.uri | https://hdl.handle.net/10037/20408 | |
dc.language.iso | eng | en_US |
dc.publisher | Optical Society of America | en_US |
dc.relation.ispartof | Acuna Maldonado, S.A. (2023). Multiple Signal Classification Algorithm: A computational microscopy tool for fluorescence microscopy. (Doctoral thesis). <a href=https://hdl.handle.net/10037/31879>https://hdl.handle.net/10037/31879</a>. | |
dc.relation.journal | Optics Express | |
dc.relation.projectID | info:eu-repo/grantAgreement/EC/H2020/749666/EU/Chip-based MUSICAL nanoscopy for imaging endocytosis pathways of phage viruses in liver sinusoidal endothelial cells/MUSICAL/ | en_US |
dc.relation.projectID | info:eu-repo/grantAgreement/RCN/BIOTEK2021/285571/Norway/Optimalisering: High-throughput and high-resolution pathology using chip-based nanoscopy// | en_US |
dc.relation.projectID | info:eu-repo/grantAgreement/EC/H2020/804233/EU/Label-free 3D morphological nanoscopy for studying sub-cellular dynamics in live cancer cells with high spatio-temporal resolution/3D-nanoMorph/ | en_US |
dc.rights.accessRights | openAccess | en_US |
dc.rights.holder | Copyright 2020 The Optical Society of America | en_US |
dc.subject | VDP::Technology: 500::Medical technology: 620 | en_US |
dc.subject | VDP::Teknologi: 500::Medisinsk teknologi: 620 | en_US |
dc.title | Soft thresholding schemes for multiple signal classification algorithm | en_US |
dc.type.version | publishedVersion | en_US |
dc.type | Journal article | en_US |
dc.type | Tidsskriftartikkel | en_US |
dc.type | Peer reviewed | en_US |