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dc.contributor.advisorMcCourt, Peter
dc.contributor.authorSzafranska, Karolina
dc.date.accessioned2022-08-05T09:33:33Z
dc.date.available2022-08-05T09:33:33Z
dc.date.issued2022-08-19
dc.description.abstractThis thesis focuses on liver sinusoidal endothelial cells (LSEC) and one of their characteristic features called fenestrations. LSEC line the hepatic sinusoids and filter solutes from the plasma. The bidirectional transport of solutes between the bloodstream and the interior of the liver is facilitated via transcellular nanopores called fenestrations. Fenestrations are dynamic structures with diameters of 50-350 nm that can respond to various drugs and adapt their diameter and/or number within minutes or even seconds. Both the number and diameter of fenestrations are important for the maintenance of proper liver function. Various agents were shown to influence LSEC fenestrations and here we gathered the literature about recreational and prescription drugs, as well as other agents, and their effects on fenestrations. This review also provides different hypotheses about fenestration structure, regulation, and dynamics as well as analyses of previously used imaging techniques and image analysis methods. In the next study, the application of machine learning and batch processing enabled the analysis of large datasets of hundreds or even thousands of images. Those methods were used in the next studies to quantitatively describe LSEC morphology. The differences in the reported values of parameters describing fenestrations depend mainly on the used imaging technique but also on sample preparation and image analysis method. In the third study, the combination of different types of microscopies in a correlative manner allowed a better understanding of those differences. The fenestration size can be influenced by the different types of fixation, especially by the drying-related shrinkage of cell body which results in about 30% increase in fenestration diameter. In the final part, the influence of xanthines was studied with the application of the previously optimized imaging techniques and image analysis methods. Xanthines are found in food and beverages but also in asthma medications. The results showed that in physiologically relevant concentrations (8-20 µg/ml, achievable by consumption of xanthine-containing products) xanthines have no negative effects and theobromine increased the number of fenestrations. In high concentrations all xanthines increased fenestration number which may find future applications using targeted delivery to avoid systemic side effects.en_US
dc.description.doctoraltypeph.d.en_US
dc.description.popularabstractThis thesis focuses on liver sinusoidal endothelial cells (LSEC) and their characteristic features called fenestrations. LSEC create a barrier between the bloodstream and the interior of the liver and allow the filtration of unwanted particles. This filtration is possible due to nanometre diameter holes – fenestrations - in LSEC that act as a sieve. This study contains 4 parts: a review of the known drugs and agents influencing fenestrations, a study focused on LSEC imaging using different types of microscopes, an article describing different image analysis techniques that allow to efficiently count and measure fenestrations and lastly the application of all these optimized methods to study xanthines – substances that can be found in food or beverages – and their effects on LSEC. The most known examples of xanthines are caffeine present in coffee and theobromine in chocolate.en_US
dc.description.sponsorshipThe main funding of this project was received from the European Union’s Horizon 2020 research and innovation programme under the Marie Sklodowska- Curie grant agreement no. 766181, project “DeLIVER”. Parts of this work were also supported by the Research Council of Norway, Grant no. 288565 “NANO2021”, Polish National Science Centre under the “SYMFONIA 3” project, grant agreement no. UMO-2015/16/W/NZ4/00070 and “SONATA 15” project, grant agreement no. UMO-2019/35/D/NZ3/01804.en_US
dc.identifier.urihttps://hdl.handle.net/10037/25981
dc.language.isoengen_US
dc.publisherUiT The Arctic University of Norwayen_US
dc.publisherUiT Norges arktiske universiteten_US
dc.relation.haspart<p>Paper I: Szafranska, K., Kruse, L.D., Holte, C.F., McCourt, P. & Zapotoczny, B. (2021). The wHole Story About Fenestrations in LSEC. <i>Frontiers in Physiology, 12</i>, 735573. Also available in Munin at <a href=https://hdl.handle.net/10037/23171>https://hdl.handle.net/10037/23171</a>. <p>Paper II: Szafranska, K., Neuman, T., Baster, Z., Rajfur, Z., Szelest, O., Holte, C., … Zapotoczny, B. (2022). From fixed-dried to wet-fixed to live – comparative super-resolution microscopy of liver sinusoidal endothelial cell fenestrations. <i>Nanophotonics, 11</i>(10), 2253-2270. Also available at <a href=https://doi.org/10.1515/nanoph-2021-0818>https://doi.org/10.1515/nanoph-2021-0818</a>. <p>Paper III: Szafranska, K., Holte, C., Kruse, L.D., Mao, H., Øie, C.I., Symonski, M., Zapotoczny, B. & McCourt, P.A.G. (2021). Quantitative analysis methods for studying fenestrations in liver sinusoidal endothelial cells. A comparative study. <i>Micron, 150</i>, 103121. Also available in Munin at <a href=https://hdl.handle.net/10037/24137>https://hdl.handle.net/10037/24137</a>. <p>Paper IV: Mao, H., Szafranska, K., Kruse, L., Holte, C., Wolfson, D.L., Ahluwalia, B.S., … McCourt, P.A.G. Effect of caffeine and other xanthines on liver sinusoidal endothelial cell ultrastructure. (Submitted manuscript).en_US
dc.relation.projectIDinfo:eu-repo/grantAgreement/EC/H2020/766181/EU/Super-resolution optical microscopy of nanosized pore dynamics in endothelial cells/DeLIVER/en_US
dc.rights.accessRightsopenAccessen_US
dc.rights.holderCopyright 2022 The Author(s)
dc.subject.courseIDDOKTOR-003
dc.subjectVDP::Mathematics and natural science: 400::Basic biosciences: 470::Cell biology: 471en_US
dc.subjectVDP::Matematikk og Naturvitenskap: 400::Basale biofag: 470::Cellebiologi: 471en_US
dc.titleNovel screening methods for nanoscale changes in liver cell fenestrations elicited by pharmaceuticalsen_US
dc.typeDoctoral thesisen_US
dc.typeDoktorgradsavhandlingen_US


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