ub.xmlui.mirage2.page-structure.muninLogoub.xmlui.mirage2.page-structure.openResearchArchiveLogo
    • EnglishEnglish
    • norsknorsk
  • Velg spraakEnglish 
    • EnglishEnglish
    • norsknorsk
  • Administration/UB
View Item 
  •   Home
  • Norges arktiske universitetsmuseum og akademi for kunstfag
  • Norges arktiske universitetsmuseum
  • Artikler, rapporter og annet (Universitetsmuseet)
  • View Item
  •   Home
  • Norges arktiske universitetsmuseum og akademi for kunstfag
  • Norges arktiske universitetsmuseum
  • Artikler, rapporter og annet (Universitetsmuseet)
  • View Item
JavaScript is disabled for your browser. Some features of this site may not work without it.

A molecular-based identification resource for the arthropods of Finland

Permanent link
https://hdl.handle.net/10037/26349
DOI
https://doi.org/10.1111/1755-0998.13510
Thumbnail
View/Open
article.pdf (2.493Mb)
Published version (PDF)
Date
2021-09-25
Type
Journal article
Tidsskriftartikkel
Peer reviewed

Author
Roslin, Tomas; Somervuo, Panu; Pentinsaari, Mikko; Hebert, Paul D. N.; Agda, Jireh; Ahlroth, Petri; Anttonen, Perttu; Aspi, Jouni; Blagoev, Gergin; Blanco, Santiago; Chan, Dean; Clayhills, Tom; deWaard, Jeremy; deWaard, Stephanie; Elliot, Tyler; Elo, Riikka; Haapala, Sami; Helve, Eero; Ilmonen, Jari; Hirvonen, Petri; Ho, Chris; Itämies, Juhani; Ivanov, Vladislav; Jakovlev, Jevgeni; Juslén, Aino; Jussila, Reijo; Kahanpää, Jere; Kaila, Lauri; Kaitila, Jari-Pekka; Kakko, Ari; Kakko, Iiro; Karhu, Ali; Karjalainen, Sami; Kjærandsen, Jostein; Koskinen, Janne; Laasonen, Erkki M.; Laasonen, Leena; Laine, Erkka; Lampila, Petri; Levesque-Beaudin, Valerie; Lu, Liuqiong; Lähteenaro, Meri; Majuri, Pekka; Malmberg, Sampsa; Manjunath, Ramya; Martikainen, Petri; Mattila, Jaakko; McKeown, Jaclyn; Metsälä, Petri; Miklasevskaja, Margarita; Miller, Meredith; Miskie, Renee; Muinonen, Arto; Mukkala, Veli-Matti; Naik, Suresh; Nikolova, Nadia; Nupponen, Kari; Ovaskainen, Otso; Österblad, Ika; Paasivirta, Lauri; Pajunen, Timo; Parkko, Petri; Paukkunen, Juho; Penttinen, Ritva; Perez, Kate; Pohjoismäki, Jaakko; Prosser, Sean; Raekunnas, Martti; Rahulan, Miduna; Rannisto, Meeri; Ratnasingham, Sujeevan; Raukko, Pekka; Rinne, Aki; Rintala, Teemu; Miranda Romo, Susana; Salmela, Jukka; Salokannel, Juha; Savolainen, Riitta; Schulman, Leif; Sihvonen, Pasi; Soliman, Dina; Sones, Jayme; Steinke, Claudia; Ståhls, Gunilla; Tabell, Jukka; Tiusanen, Mikko; Várkonyi, Gergely; Vesterinen, Eero J.; Viitanen, Esko; Vikberg, Veli; Viitasaari, Matti; Vilen, Jussi; Warne, Connor; Wei, Catherine; Winqvist, Kaj; Zakharov, Evgeny; Mutanen, Marko
Abstract
To associate specimens identified by molecular characters to other biological knowledge, we need reference sequences annotated by Linnaean taxonomy. In this study, we (1) report the creation of a comprehensive reference library of DNA barcodes for the arthropods of an entire country (Finland), (2) publish this library, and (3) deliver a new identification tool for insects and spiders, as based on this resource. The reference library contains mtDNA COI barcodes for 11,275 (43%) of 26,437 arthropod species known from Finland, including 10,811 (45%) of 23,956 insect species. To quantify the improvement in identification accuracy enabled by the current reference library, we ran 1000 Finnish insect and spider species through the Barcode of Life Data system (BOLD) identification engine. Of these, 91% were correctly assigned to a unique species when compared to the new reference library alone, 85% were correctly identified when compared to BOLD with the new material included, and 75% with the new material excluded. To capitalize on this resource, we used the new reference material to train a probabilistic taxonomic assignment tool, FinPROTAX, scoring high success. For the full-length barcode region, the accuracy of taxonomic assignments at the level of classes, orders, families, subfamilies, tribes, genera, and species reached 99.9%, 99.9%, 99.8%, 99.7%, 99.4%, 96.8%, and 88.5%, respectively. The FinBOL arthropod reference library and FinPROTAX are available through the Finnish Biodiversity Information Facility (www.laji.fi) at https://laji.fi/en/theme/protax. Overall, the FinBOL investment represents a massive capacity-transfer from the taxonomic community of Finland to all sectors of society.
Publisher
Wiley
Citation
Roslin, Somervuo, Pentinsaari, Hebert, Agda, Ahlroth, Anttonen, Aspi, Blagoev, Blanco, Chan, Clayhills, deWaard, deWaard, Elliot, Elo, Haapala, Helve, Ilmonen, Hirvonen, Ho, Itämies, Ivanov, Jakovlev, Juslén, Jussila, Kahanpää, Kaila, Kaitila, Kakko, Kakko, Karhu, Karjalainen, Kjærandsen, Koskinen, Laasonen, Laasonen, Laine, Lampila, Levesque-Beaudin, Lu, Lähteenaro, Majuri, Malmberg, Manjunath, Martikainen, Mattila, McKeown, Metsälä, Miklasevskaja, Miller, Miskie, Muinonen, Mukkala, Naik, Nikolova, Nupponen, Ovaskainen, Österblad, Paasivirta, Pajunen, Parkko, Paukkunen, Penttinen, Perez, Pohjoismäki, Prosser, Raekunnas, Rahulan, Rannisto, Ratnasingham, Raukko, Rinne, Rintala, Miranda Romo, Salmela, Salokannel, Savolainen, Schulman, Sihvonen, Soliman, Sones, Steinke, Ståhls, Tabell, Tiusanen, Várkonyi, Vesterinen, Viitanen, Vikberg, Viitasaari, Vilen, Warne, Wei, Winqvist, Zakharov, Mutanen. A molecular-based identification resource for the arthropods of Finland. Molecular Ecology Resources. 2022;22(2):803-822
Metadata
Show full item record
Collections
  • Artikler, rapporter og annet (Universitetsmuseet) [425]
Copyright 2021 The Author(s)

Related items

Showing items related by title, author, creator and subject.

  • Thumbnail

    Adolescent smoking and trends in lung cancer incidence among young adults in Norway 1954 - 1998 

    Strand, Trond-Eirik; Malayeri, Columbo; Eskonsipo, Petri Karlo Juhani (Master thesis; Mastergradsoppgave, 2003)
  • Thumbnail

    Differential prognostic impact of platelet-derived growth factor receptor Expression in NSCLC 

    Kilvær, Thomas Karsten; Rakaee, Mehrdad; Hellevik, Turid; Vik, Jørg; de Petris, Luigi; Dønnem, Tom; Strell, Carina; Østman, Arne; Busund, Lill-Tove; Martinez, Inigo Zubiavrre (Journal article; Tidsskriftartikkel; Peer reviewed, 2019-07-15)
    Preclinical evidence suggests that stromal expression of platelet-derived growth factor receptors (PDGFRs) stimulates tumor development and diminishes intratumoral drug uptake. In non-small cell lung cancer (NSCLC), the clinical relevance of stromal PDGFR expression remains uncertain. Tumor specimens from 553 patients with primary operable stage I-IIIB NSCLC was obtained and tissue micro-arrays (TMA) ...
  • Thumbnail

    Nrf2 and SQSTM1/p62 jointly contribute to mesenchymal transition and invasion in glioblastoma 

    Pölonen, Petri; Jawahar Deen, Ashik; Leinonen, Hanna M.; Jyrkkänen, Henna-Kaisa; Kuosmanen, Suvi; Mononen, Mimmi; Jain, Ashish; Tuomainen, Tomi; Pasonen-Seppänen, Sanna; Hartikainen, Jaana M.; Mannermaa, Arto; Nykter, Matti; Tavi, Pasi; Johansen, Terje; Heinäniemi, Merja; Levonen, Anna-Liisa (Journal article; Tidsskriftartikkel; Peer reviewed, 2019-08-23)
    Accumulating evidence suggests that constitutively active Nrf2 has a pivotal role in cancer as it induces pro-survival genes that promote cancer cell proliferation and chemoresistance. The mechanisms of Nrf2 dysregulation and functions in cancer have not been fully characterized. Here, we jointly analyzed the Broad-Novartis Cancer Cell Line Encyclopedia (CCLE) and the Cancer Genome Atlas (TCGA) ...

Browse

Browse all of MuninCommunities & CollectionsAuthor listTitlesBy Issue DateBrowse this CollectionAuthor listTitlesBy Issue Date
Login

Statistics

View Usage Statistics
UiT

Munin is powered by DSpace

UiT The Arctic University of Norway
The University Library
uit.no/ub - munin@ub.uit.no

Accessibility statement (Norwegian only)