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Complete Genome Sequences of 12 Quinolone-Resistant Escherichia coli Strains Containing qnrS1 Based on Hybrid Assemblies

dc.contributor.authorKaspersen, Håkon
dc.contributor.authorHaverkamp, Thomas Hendricus Augustus
dc.contributor.authorIlag, Hanna Karin
dc.contributor.authorØines, Øivind
dc.contributor.authorSekse, Camilla
dc.contributor.authorSlettemeås, Jannice Schau
dc.date.accessioned2021-06-16T08:01:33Z
dc.date.available2021-06-16T08:01:33Z
dc.date.issued2021-01-28
dc.description.abstractIn total, 12 quinolone-resistant <i>Escherichia coli</i> (QREC) strains containing <i>qnrS1</i> were submitted to long-read sequencing using a FLO-MIN106 flow cell on a MinION device. The long reads were assembled with short reads (Illumina) and analyzed using the MOB-suite pipeline. Six of these QREC genome sequences were closed after hybrid assembly.en_US
dc.identifier.citationKaspersen, Haverkamp, Ilag, Øines, Sekse, Slettemeås. Complete Genome Sequences of 12 Quinolone-Resistant Escherichia coli Strains Containing qnrS1 Based on Hybrid Assemblies. Microbiology Resource Announcements (MRA). 2021en_US
dc.identifier.cristinIDFRIDAID 1886614
dc.identifier.doi10.1128/MRA.01190-20
dc.identifier.issn2169-8287
dc.identifier.issn2576-098X
dc.identifier.urihttps://hdl.handle.net/10037/21430
dc.language.isoengen_US
dc.publisherAmerican Society for Microbiologyen_US
dc.relation.journalMicrobiology Resource Announcements (MRA)
dc.relation.projectIDinfo:eu-repo/grantAgreement/EC/H2020/773830/EU/Promoting One Health in Europe through joint actions on foodborne zoonoses, antimicrobial resistance and emerging microbiological hazards/One Health EJP/en_US
dc.rights.accessRightsopenAccessen_US
dc.rights.holderCopyright 2021 The Author(s)en_US
dc.subjectVDP::Medical disciplines: 700::Basic medical, dental and veterinary science disciplines: 710en_US
dc.subjectVDP::Medisinske Fag: 700::Basale medisinske, odontologiske og veterinærmedisinske fag: 710en_US
dc.titleComplete Genome Sequences of 12 Quinolone-Resistant Escherichia coli Strains Containing qnrS1 Based on Hybrid Assembliesen_US
dc.type.versionpublishedVersionen_US
dc.typeJournal articleen_US
dc.typeTidsskriftartikkelen_US
dc.typePeer revieweden_US


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