Now showing items 1-20 of 27

    • Approximate Bayesian Inference Based on Expected Evaluations 

      Hammer, Hugo Lewi; Riegler, Michael (Journal article; Tidsskriftartikkel; Peer reviewed, 2023-02-01)
      Approximate Bayesian computing (ABC) and Bayesian Synthetic likelihood (BSL) are two popular families of methods to evaluate the posterior distribution when the likelihood function is not available or tractable. For existing variants of ABC and BSL, the focus is usually first put on the simulation algorithm, and after that the form of the resulting approximate posterior distribution comes as a ...
    • Automatic thumbnail selection for soccer videos using machine learning 

      Husa, Andreas; Midoglu, Cise; Hammou, Malek; Hicks, Steven; Johansen, Dag; Kupka, Tomas; Riegler, Michael; Halvorsen, Pål (Chapter; Bokkapittel, 2022-08-05)
      Thumbnail selection is a very important aspect of online sport video presentation, as thumbnails capture the essence of important events, engage viewers, and make video clips attractive to watch. Traditional solutions in the soccer domain for presenting highlight clips of important events such as goals, substitutions, and cards rely on the manual or static selection of thumbnails. However, such ...
    • Áika: A Distributed Edge System for AI Inference 

      Alslie, Joakim Aalstad; Ovesen, Aril Bernhard; Nordmo, Tor-Arne Schmidt; Johansen, Håvard D.; Halvorsen, Pål; Riegler, Michael; Johansen, Dag (Journal article; Tidsskriftartikkel; Peer reviewed, 2022-06-17)
      Video monitoring and surveillance of commercial fisheries in world oceans has been proposed by the governing bodies of several nations as a response to crimes such as overfishing. Traditional video monitoring systems may not be suitable due to limitations in the offshore fishing environment, including low bandwidth, unstable satellite network connections and issues of preserving the privacy of crew ...
    • Comparative validation of multi-instance instrument segmentation in endoscopy: Results of the ROBUST-MIS 2019 challenge 

      Ross, Tobias; Reinke, Annika; M. Full, Peter; Wagner, Martin; Kenngott, Hannes; Apitz, Martin; Hempe, Hellena; Mindroc Filimon, Diana; Scholz, Patrick; Tran, Thuy Nuong; Bruno, Pierangela; Arbeláez, Pablo; Bian, Gui-Bin; Bodenstedt, Sebastian; Lindström Bolmgren, Jon; Bravo-Sánchez, Laura; Chen, Hua-Bin; González, Cristina; Guo, Dong; Halvorsen, Pål; Heng, Pheng-Ann; Hosgor, Enes; Hou, Zeng-Guang; Isensee, Fabian; Jha, Debesh; Jiang, Tingting; Jin, Yueming; Kirtac, Kadir; Kletz, Sabrina; Leger, Stefan; Li, Zhixuan; H. Maier-Hein, Klaus; Ni, Zhen-Liang; Riegler, Michael; Schoeffmann, Klaus; Shi, Ruohua; Speidel, Stefanie; Stenzel, Michael; Twick, Isabell; Wang, Gutai; Wang, Jiacheng; Wang, Liansheng; Wang, Lu; Zhang, Yujie; Zhou, Yan-Jie; Zhu, Lei; Wiesenfarth, Manuel; Kopp-Schneider, Annette; P. Müller-Stich, Beat; Maier-Hein, Lena (Journal article; Tidsskriftartikkel; Peer reviewed, 2020-11-28)
      Intraoperative tracking of laparoscopic instruments is often a prerequisite for computer and roboticassisted interventions. While numerous methods for detecting, segmenting and tracking of medical instruments based on endoscopic video images have been proposed in the literature, key limitations remain to be addressed: Firstly, robustness, that is, the reliable performance of state-of-the-art methods ...
    • A comprehensive analysis of classification methods in gastrointestinal endoscopy imaging 

      Jha, Debesh; Ali, Sharib; Hicks, Steven; Thambawita, Vajira L B; Borgli, Hanna; Smedsrud, Pia H.; de Lange, Thomas; Pogorelov, Konstantin; Wang, Xiaowei; Harzig, Philipp; Tran, Minh-Triet; Meng, Wenhua; Hoang, Trung-Hieu; Dias, Danielle; Ko, Tobey H.; Agrawal, Taruna; Ostroukhova, Olga; Khan, Zeshan; Tahir, Muhammed Atif; Liu, Yang; Chang, Yuan; Kirkerød, Mathias; Johansen, Dag; Lux, Mathias; Johansen, Håvard D.; Riegler, Michael; Halvorsen, Pål (Journal article; Tidsskriftartikkel; Peer reviewed, 2021-02-19)
      Gastrointestinal (GI) endoscopy has been an active field of research motivated by the large number of highly lethal GI cancers. Early GI cancer precursors are often missed during the endoscopic surveillance. The high missed rate of such abnormalities during endoscopy is thus a critical bottleneck. Lack of attentiveness due to tiring procedures, and requirement of training are few contributing factors. ...
    • A Deep Diagnostic Framework Using Explainable Artificial Intelligence and Clustering 

      Thunold, Håvard Horgen; Riegler, Michael; Yazidi, Anis; Hammer, Hugo Lewi (Journal article; Tidsskriftartikkel; Peer reviewed, 2023-11-09)
      An important part of diagnostics is to gain insight into properties that characterize a disease. Machine learning has been used for this purpose, for instance, to identify biomarkers in genomics. However, when patient data are presented as images, identifying properties that characterize a disease becomes far more challenging. A common strategy involves extracting features from the images and ...
    • Deep learning and hand-crafted feature based approaches for polyp detection in medical videos 

      Pogorelov, Konstantin; Ostroukhova, Olga; Jeppsson, Mattis; Espeland, Håvard; Griwodz, Carsten; de Lange, Thomas; Riegler, Michael; Halvorsen, Pål (Journal article; Tidsskriftartikkel; Peer reviewed, 2018-07-23)
      Video analysis including classification, segmentation or tagging is one of the most challenging but also interesting topics multimedia research currently try to tackle. This is often related to videos from surveillance cameras or social media. In the last years, also medical institutions produce more and more video and image content. Some areas of medical image analysis, like radiology or brain ...
    • Deep Tower Networks for Efficient Temperature Forecasting from Multiple Data Sources 

      Eide, Siri Sofie; Riegler, Michael; Hammer, Hugo Lewi; Bremnes, John Bjørnar (Journal article; Tidsskriftartikkel; Peer reviewed, 2022-04-06)
      Many data related problems involve handling multiple data streams of different types at the same time. These problems are both complex and challenging, and researchers often end up using only one modality or combining them via a late fusion based approach. To tackle this challenge, we develop and investigate the usefulness of a novel deep learning method called tower networks. This method is able ...
    • Dissecting deep neural networks for better medical image classification and classification understanding 

      Hicks, Steven Alexander; Riegler, Michael; Pogorelov, Konstantin; Ånonsen, Kim Vidar; de Lange, Thomas; Johansen, Dag; Jeppsson, Mattis; Randel, Kristin Ranheim; Eskeland, Sigrun Losada; Halvorsen, Pål (Journal article; Tidsskriftartikkel; Peer reviewed, 2018-07-23)
      Neural networks, in the context of deep learning, show much promise in becoming an important tool with the purpose assisting medical doctors in disease detection during patient examinations. However, the current state of deep learning is something of a "black box", making it very difficult to understand what internal processes lead to a given result. This is not only true for non-technical users but ...
    • Efficient disease detection in gastrointestinal videos – global features versus neural networks 

      Pogorelov, Konstantin; Riegler, Michael; Eskeland, Sigrun Losada; de Lange, Thomas; Johansen, Dag; Griwodz, Carsten; Schmidt, Peter Thelin; Halvorsen, Pål (Journal article; Tidsskriftartikkel; Peer reviewed, 2017-07-19)
      Analysis of medical videos from the human gastrointestinal (GI) tract for detection and localization of abnormalities like lesions and diseases requires both high precision and recall. Additionally, it is important to support efficient, real-time processing for live feedback during (i) standard colonoscopies and (ii) scalability for massive population-based screening, which we conjecture can be done ...
    • Efficient live and on-demand tiled HEVC 360 VR video streaming 

      Jeppsson, Mattis; Espeland, Håvard; Kupka, Tomas; Langseth, Ragnar; Petlund, Andreas; Peng, Qiaoqiao; Xue, Chuansong; Johansen, Dag; Pogorelov, Konstantin; Stensland, Håkon Kvale; Griwodz, Carsten; Riegler, Michael; Halvorsen, Pål (Journal article; Tidsskriftartikkel; Peer reviewed, 2019)
      360∘ panorama video displayed through Virtual Reality (VR) glasses or large screens offers immersive user experiences, but as such technology becomes commonplace, the need for efficient streaming methods of such high-bitrate videos arises. In this respect, the attention that 360∘ panorama video has received lately is huge. Many methods have already been proposed, and in this paper, we shed more light ...
    • Efficient quantile tracking using an oracle 

      Hammer, Hugo Lewi; Yazidi, Anis; Riegler, Michael; Rue, Håvard (Journal article; Tidsskriftartikkel; Peer reviewed, 2022-04-14)
      Concept drift is a well-known issue that arises when working with data streams. In this paper, we present a procedure that allows a quantile tracking procedure to cope with concept drift. We suggest using expected quantile loss, a popular loss function in quantile regression, to monitor the quantile tracking error, which, in turn, is used to efficiently adapt to concept drift. The suggested ...
    • Exploration of Different Time Series Models for Soccer Athlete Performance Prediction 

      Kulakou, Siarhei; Ragab, Nourhan; Midoglu, Cise; Boeker, Matthias; Johansen, Dag; Riegler, Michael; Halvorsen, Pål (Journal article; Tidsskriftartikkel; Peer reviewed, 2022-06-29)
      Professional sports achievements combine not only the individual physical abilities of athletes but also many modern technologies in areas such as medicine, equipment production, nutrition, and physical and mental health monitoring. In this work, we address the problem of predicting soccer players’ ability to perform, from subjective self-reported wellness parameters collected using a commercially ...
    • FANet: A Feedback Attention Network for Improved Biomedical Image Segmentation 

      Jha, Debesh; Riegler, Michael; Johansen, Håvard D.; Johansen, Dag; Rittscher, Jens; Halvorsen, Pål; Ali, Sharib (Journal article; Tidsskriftartikkel; Peer reviewed, 2022-03-25)
      The increase of available large clinical and experimental datasets has contributed to a substantial amount of important contributions in the area of biomedical image analysis. Image segmentation, which is crucial for any quantitative analysis, has especially attracted attention. Recent hardware advancement has led to the success of deep learning approaches. However, although deep learning models are ...
    • GridHTM: Grid-Based Hierarchical Temporal Memory for Anomaly Detection in Videos 

      Monakhov, Vladimir; Thambawita, Vajira L B; Halvorsen, Pål; Riegler, Michael (Journal article; Tidsskriftartikkel; Peer reviewed, 2023-02-13)
      The interest in video anomaly detection systems that can detect different types of anomalies, such as violent behaviours in surveillance videos, has gained traction in recent years. The current approaches employ deep learning to perform anomaly detection in videos, but this approach has multiple problems. For example, deep learning in general has issues with noise, concept drift, explainability, ...
    • HyperKvasir, a comprehensive multi-class image and video dataset for gastrointestinal endoscopy 

      Borgli, Hanna; Thambawita, Vajira; Smedsrud, Pia H; Hicks, Steven; Jha, Debesh; Eskeland, Sigrun Losada; Randel, Kristin Ranheim; Pogorelov, Konstantin; Lux, Mathias; Dang Nguyen, Duc Tien; Johansen, Dag; Griwodz, Carsten; Stensland, Håkon Kvale; Garcia-Ceja, Enrique; Schmidt, Peter T; Hammer, Hugo Lewi; Riegler, Michael; Halvorsen, Pål; de Lange, Thomas (Journal article; Tidsskriftartikkel; Peer reviewed, 2020-08-28)
      Artificial intelligence is currently a hot topic in medicine. However, medical data is often sparse and hard to obtain due to legal restrictions and lack of medical personnel for the cumbersome and tedious process to manually label training data. These constraints make it difficult to develop systems for automatic analysis, like detecting disease or other lesions. In this respect, this article ...
    • Kvasir-SEG: A Segmented Polyp Dataset 

      Jha, Debesh; Pia H, Smedsrud; Riegler, Michael; Halvorsen, Pål; de Lange, Thomas; Johansen, Dag; Johansen, Håvard D. (Journal article; Tidsskriftartikkel; Peer reviewed, 2020-01-24)
      Pixel-wise image segmentation is a highly demanding task in medical-image analysis. In practice, it is difficult to find annotated medical images with corresponding segmentation masks. In this paper, we present Kvasir-SEG: an open-access dataset of gastrointestinal polyp images and corresponding segmentation masks, manually annotated by a medical doctor and then verified by an experienced ...
    • ML-Peaks: Chip-seq peak detection pipeline using machine learning techniques 

      Sheshkal, Sajad Amouei; Riegler, Michael; Hammer, Hugo Lewi (Chapter; Bokkapittel, 2023-07-17)
      CHIP-Seq data is critical for identifying the locations where proteins bind to DNA, offering valuable insights into disease molecular mechanisms and potential therapeutic targets. However, identifying regions of protein binding, or peaks, in CHIP-seq data can be challenging due to limitations in peak detection methods. Current computational tools often require manual human inspection using data ...
    • MSRF-Net: A Multi-Scale Residual Fusion Network for Biomedical Image Segmentation 

      Srivastava, Abhishek; Jha, Debesh; Chanda, Sukalpa; Pal, Umapada; Johansen, Håvard D.; Johansen, Dag; Riegler, Michael; Ali, Sharib; Halvorsen, Pål (Journal article; Tidsskriftartikkel; Peer reviewed, 2021-12-23)
      Methods based on convolutional neural networks have improved the performance of biomedical image segmentation. However, most of these methods cannot efficiently segment objects of variable sizes and train on small and biased datasets, which are common for biomedical use cases. While methods exist that incorporate multi-scale fusion approaches to address the challenges arising with variable ...
    • Performance of data enhancements and training optimization for neural network: A polyp detection case study 

      Henriksen, Fredrik Lund; Jensen, Rune; Stensland, Håkon Kvale; Johansen, Dag; Riegler, Michael; Halvorsen, Pål (Journal article; Tidsskriftartikkel; Peer reviewed, 2019-08-05)
      Deep learning using neural networks is becoming more and more popular. It is frequently used in areas like video analysis, image retrieval, traffic forecast and speech recognition. In this respect, the learning and training process usually requires a lot of data. However, in many areas, data is scarce which is definitely the case in our medical application scenario, i.e., polyp detection in the ...